Banner
Current IssueEditorial BoardOnline First Articles
Current IssueEditorial BoardOnline First Articles
Indian Journal of
Agricultural Research
Print ISSN: 0367-8245
Online ISSN: 0976-058X
NASS Rating
5.60
SJR
0.217
CiteScore
0.595

Chief Editor:
V. Geethalakshmi
Tamil Nadu Agricultural University Coimbatore, INDIA
Frequency:Monthly
Indexing:
BIOSIS Preview, ISI Citation Index, Biological Abstracts, Elsevier (Scopus and Embase), AGRICOLA, Go...

Indian Journal of Agricultural Research, volume 46 issue 3 (september 2012) : 226-233

MICROSATELLITE MARKER ANALYSIS OF AZUCENA X HBC 19 F5 RICE POPULATION

Pankaj Bhatia*, Rajinder Kumar Jain, Vijay Kumar Chowdhury
1Department of BMB, CCS Haryana Agricultural University, Hisar-125 004, India

  • Submitted|

  • First Online |

  • doi

Cite article:- Bhatia* Pankaj, Jain Kumar Rajinder, Chowdhury Kumar Vijay (2025). MICROSATELLITE MARKER ANALYSIS OF AZUCENA X HBC 19 F5 RICE POPULATION. Indian Journal of Agricultural Research. 46(3): 226-233. doi: .

ABSTRACT

A F5 population (211 lines) derived from a cross between Azucena (japonica) x HBC 19 (Basmati) using single seed descent method was assessed for variability for basmati grain quality traits. A total of 50 randomly selected F5 plants were subjected to SSR (Microsatellite) marker analysis. The 50 Azucena x HBC 19 F5 plants had an allele from either of the two parental lines (homozygous condition) or alleles from both the parental rice varieties (Heterozygous condition). Based on microsatellite marker analysis of F5 population of Azucena x HBC 19 it was found that significant correlation between RM 310 and aroma existed.

REFERENCES

  1. Ahn SN, Bollich CN, McClung AM and Tanksley SD (1993) RFLP analysis of genomic regions associated with cooked- kernel elongation in rice. Theor. App. Genet. 87 : 27.
  2. Ahn SN, Bollich CN and Tanksley SD (1992) RFLP tagging of a gene for aroma in rice. Theor. App. Genet. 84 : 825.
  3. Bligh HFJ, Blackhall NW, Edwards KJ and McClung AM (1999) Using amplified fragment length polymorphisms and simple sequence length polymorphisms to identify cultivars of Brown and White Milled Rice. Crop Sc. 39 : 1715.
  4. Chen X, Temnykh S Xu Y Cho YG and McCouch SR (1997) Development of microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.). Theor. App. Genet. 95 : 553.
  5. Garland S, Lewis L, Blakeney A, Reinke R and Henry R (2000) PCR-based molecular markers for the fragrance gene in rice (Oryza sativa L.). Theor. App. Genet. 101 : 364.
  6. Ghosh S, Karanjawala ZE and Hauser ER (1997) Methods for precise sizing, automated binning of alleles, and reduction of error rated in large-scale genotyping using fluorescently labeled dinucleotide markers. Genome Res. 7 : 165.
  7. Jain S, Jain RK and McCouch SR (2004) Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite markers. Theor. App. Genet. 109 : 965.
  8. Katiyar SK, Kaliappan A and Verulkar SB (2001) MAS based introgression of gall midge resistance genes (GM-2 and GM-4) in aromatic and HYVs of rice. Proc 8th Nat. Rice Biotech. Network pp. 137.
  9. Khush GS and Dela Cruz N (1998) Developing Basmati rices with high yield potential. Cahiers Options Mediterraneennes 24: Rice quality. A pluridisciplinary approach. (CD-ROM computer file) CIHEAM, Paris.
  10. Li J Ku D and Li L (1996) Analysis of fragrance inheritance in scented rice variety, Shenxiangjing 4’. Acta Agric. Shanghai 12(3) : 78.
  11. Lorieux M, Petrov M, Huang N, Guiderdoni E and Ghesquiere A (1996) Aroma in rice: genetic analysis of a quantitative trait. Theor. App. Genet. 93 : 1145.
  12. Nagaraju J, Kathirvel M, Ramesh Kumar R, Siddiq EA and Hasnain SE (2002) Genetic analysis of traditional and evolved Basmati and non-Basmati rice varieties by using fluorescence based ISSR-PCR and SSR markers. Proc. of Nat. Acad. Sci. USA 99(9) : 5836.
  13. Pandey S (2008) The true price of rice. Rice Today 7 : 36.
  14. Ram S, Dhar MK, Singh VP, Mahapatra T and Sharma RP (1998) Molecular mapping of loci affecting the cooking quality traits in rice. 7th ARBN Ann. Meet. UAS Banglore (Abstr.).
  15. Rana P (2001) Studies on rice DNA fingerprinting and breeding using microsatellite markers. Ph.D (Biotechnology) thesis submitted to CCSHAU, Hisar.
  16. Rani NS and Singh RK (2003) Efforts on aromatic rice improvement in India. In : A treatise on the Scented Rices of India, Ist Edn., (Singh and Singh eds.) Kalyani Publishers, New Delhi pp. 23.
  17. Rao GJN, Baisakh N, Ramana M, Sahoo TN and Rao S (2000) Genetic Divergence among the somaclones of an aromatic indica rice. In Abstracts of the 4th Int. Rice Gen. Symposium, IRRI, Philippines, pp. 142.
  18. Rohlf MS (1990) NTSYS-PC Numerical Taxonomy and Multivariate Analysis System. Version 1.60. Appl. Biostat. New York.
  19. Saghai-Maroof MA Soliman KM Jorgensen RA and Allerd RW (1984) Ribosomal spacer length polymorphism in barley: Mendelian inheritance, chromosomal location and population dynamics. Proc. Nat. Acad. Sci. USA 81 : 8014.
  20. Santhy V, Mohapatra T Dadlani M Sharma SP and Sharma RP (2000) DNA markers for testing distinctness of rice varieties. Plant Variet. Seeds 13 : 141.
  21. Singh RK, Singh US, Khush GS and Rohilla R (2000) Genetics and biotechnology quality traits in aromatic rices. In: Aromatic Rices (eds Singh RK, Singh US, Khush GSed), OxFord & IBH Publishing Co. Pvt. Ltd., New Delhi, pp. 47.
  22. Temnykh S, Park WD, Ayres N, Cartinhour S, Hauck N Lipovich L, Cho YG Ishii T and McCouch SR (2000) Mapping and genome organization of microsatellite sequence in rice (Oryza sativa L.). Theor. App. Genet. 100 : 697.
Reviewed By

Download Article
In this Article
    Contact us
    Follow us

    Editorial Board

    View all (0)