Legume Research

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Legume Research, volume 44 issue 4 (april 2021) : 401-406

The Electrophoretic Contribution to the Solutions of Taxonomical Problems of Some Lathyrus L. Taxa Growing in Turkey

İ. Emre1, H. Genc2,*, A. Sahin3
1Department of Primary Education, Faculty of Education, Firat University, 23119, Elazig, Turkey.
2Department of Science Education, Faculty of Education, Burdur Mehmet Akif University, Burdur, 15100, Turkey.
3Department of Mathematics and Science Education, Faculty of Education, Erciyes University, 38039, Kayseri, Turkey.
  • Submitted30-05-2020|

  • Accepted10-08-2020|

  • First Online 09-11-2020|

  • doi 10.18805/LR-569

Cite article:- Emre İ., Genc H., Sahin A. (2020). The Electrophoretic Contribution to the Solutions of Taxonomical Problems of Some Lathyrus L. Taxa Growing in Turkey . Legume Research. 44(4): 401-406. doi: 10.18805/LR-569.
Background: The seed proteins are used as molecular markers to clarify the systematic problems. Also, electrophoretic techniques are safe tools to identify the seed proteins. In present study, it was used the SDS-PAGE technique to solve the taxonomical problems of eight taxa of genus Lathyrus belong to three sections Orobus, Lathyrostylis and Pratensis according to the globulin B and glutelin. 

Methods: The seed materials were collected from natural habitats and 0.5 g seed were homogenized and centrifuged based on extraction procedure. In addition, the amounts of seed storage protein subfractions were determined by using protein assay. The electrophoretic analysis were performed according to the 12% SDS-PAGE. The gel documentation system (Bio-Rad, USA) was used to analyse the electrophoretic data and UPGAMA was used to construct the dendogram to show the relationships among the species under focus. 

Results: Current study showed that the species of section Pratensis were different from species of sections Orobus and Lathyrostylis. The differences among the studied taxa shown clearly and all studied taxa were choosen from the protein patterns. Furthermore, present study demonstrated that L. nivalis has the highest globulin B and glutelin. Results of the present study generally supported the morphological data. 
Legumes are important protein resources for human consumption in the developing countries (Kafadar et al., 2019). Lathyrus L., which is a legume, has more than 200 taxa and the main center of variety is the eastern Mediterrenean and Irano-Turanian regions (Allkin et al., 1986; Genc and Sahin, 2011; Marghali et al., 2016). The genus has 79 taxa in Turkey, 25 of whose are endemic (Davis et al., 1988; Guner and Ozhatay 2000; Ozbek-Yazici et al., 2019). Kupicha (1983) classified 153 Lathyrus into 12 or 13 sections by using morphological data. The studies in the literature generally accepted Kupicha’s classification as a reference and molecular studies confirmed this classification (Marghali et al., 2014; Cildir et al., 2017).
 
Different techniques including isozyme analysis (Sammour et al., 2019), fatty acid analysis (Bagci et al., 2001; Arslan, 2017), electrophoresis (El-Shanshoury, 1997; Przybylska et_al2000; Ben Brahim et al., 2002; Radwan et al., 2013), RFLP, AFLP (Badr et al., 2002; Belaid et al., 2006) and RAPD techniques (Chtourou-Ghorbel et al., 2001, 2002; Akter et al., 2015) are used to classify the Lathyrus taxa as well as morphological characters. Seed storage proteins are significant biochemical markers because they are less affected by the environment and they are used in genetic variation studies and to characterize cultivars (Sofailan et al., 2015). SDS-PAGE is also a powerful tool for the distinguishing seed proteins to solve the taxonomical problems (Ladizinsky and Hymowitz, 1979; Nikolic et al., 2012). The reason for this is electrophoresis is a practical and reliable process for the genetic studies and it provides some superiorities compared to morphological techniques for the identifications  of species (Sinha et al., 2012; Sammour et al., 2019). Present study demonstrated the relationships among the Lathyrus taxa comprising L. aureus, L. brachypterus var. brachypterus, L. nivalis, L. digitatus, L. spathulatus, L. boissieri, L. pratensis, L. laxiflorus subsp. laxiflorus from three sections of Orobus, Lathyrostylis and Pratensis in Turkey by using globulin B and glutelins patterns.
Dry seeds of eight Lathyrus species belong to three sections namely Orobus, Lathyrostylis and Pratensis (Kupicha 1983)were gathered from different localities of Turkey (Table 1) in 2004 and 2005. The laboratory studies were done in Firat University, Faculty of Science and Arts, Department of Biology Molecular Biology laboratory. Seed proteins were obtained based on Vaz et al., (2004)’ method. 0.5 g seed materials were grounded and homogenized with water, 5% (w/v) NaCl, 7% ethanol and 0.25% (w/v) NaOH, respectively. At first, the seed materials were centrifuged at 7800 g after the material was extracted with distilled water for 2 hours. The pellet was used to globulin B and glutelins in the next steps. Secondly, the original pellet was treated with 5% (w/v) NaCl for 2 hours and centrifugated at 7800 g for 15 minutes to take globulin B fractions in the supernatants. Later, the pellet was extracted with 75% ethanol (v/v) for 2 hours and centrifuged at 7800 g for 15 minutes to take the prolamins in the supernant. Lastly, the pellet was extracted with 0.25% (w/v) NaOH for 2 hours and suspension was centrifuged at 7800 g for 15 minutes to take glutelins in the supernatant. The samples of protein subfraction were deposited at -20°C until the electrophoretic analysis. The amounts of protein subfraction were measured by using Bio-Rad DC protein assay (Bio-Rad Laboratories, UK) and Fermentas [SMO431; (116.0 kDa (kilodalton), 66.2 kDa, 45 kDa, 35 kDa, 25 kDa, 18.4 kDa)] was used as a marker because the prolamin amounts were quantified lowest and the electrophoretic analysis of prolamins was not performed. The equal amount of protein subfractions was loaded on 12% SDS-PAGE (Laemmli, 1970). Electrophoretic analysis was conducted at 20 mA by using Protean II Electrophoresis Cell (Bio-Rad Laboratories, UK). The gels were stained using Coomassie Brilliant Blue (Sigma Aldrich Chemie, Germany) for 30 min. at 67°C and destained in destaining solution for 3-4 h at 67°C to view the protein bands.
 

Table 1: Localities of the investigated Lathyrus taxa.


 
Statistical analysis
 
A gel documentation system (Bio-Rad, USA) and Quantity 1-D analysis software were used to evaluate the electrophoretic results. The dendogram was formed with 4.0 % tolerance in UPGAMA (Unweighed Pair-Group Arithmetic Mean).
The electrophoretic results of globulin B and glutelin are given in Fig 1 and 2, respectively. The differences among the studied taxa were clearly observed and the present study demonstrated that they have distinct relationships (Fig 3 and 4). A relationship was observed between L. digitatus and L. brachypterus var. brachypterus (61.0 % similarity) and also L. nivalis demonstrated a high relationship with L. boissieri (50.0 % similarity) in first cluster according to the globulin B band profiles (Fig 3). In addition, L. spathulatus has less homology within studied five species of section Lathyrostylis and it is placed outer part of cluster I. L. pratensis and L. laxiflorus subsp. laxiflorus (59.6 % similarity) also, are located in the second cluster. But L. aureus, which is a member of section Orobus, remained out of  the clusters (Fig 3).
 

Fig 1: Electrophoretic band profiles of globulin B proteins of the studied taxa


 

Fig 2: Electrophoretic band profiles of glutelin proteins of the studied taxa.


 

Fig 3: Dendogram of Lathyrus taxa based on seed globulin B profiles.


 
On the other hand, results of glutelin electrophoretic bands showed that studied taxa have been clustered in two clusters (Fig 4). In the cluster I, L. brachypterus var. brachypterus demonstrated a close similarity with L. nivalis (54.9% similarity) and also L. boissieri was associated with these two taxa (42.2% similarity for L. brachypterus var. brachypterus and 53.2% similarity for L. nivalis). L. digitatus and L. spathulatus also exhibited close similarity (49.5% similarity) in cluster I. Additionally, L. pratensis and L. laxiflorus subsp. laxiflorus were placed in cluster II. However,  L. aureus was located out of clusters (Fig 4). This study showed at the same time that globulin B amounts are higher than prolamin and glutelin amounts. L. nivalis has the highest globulin B amount (5.640 µg/ml) and glutelin amounts (4.219 µg/ml) while L. boissieri has the lowest globulin B amount (3.625 µg/ml) and glutelin amounts (2.227 µg/ml). The present study also found that the prolamin amounts of Lathyrus taxa were the lowest (Table 2).
 

Fig 4: Dendogram of Lathyrus taxa based on seed glutelin profiles.


 

Table 2: Protein amounts of the investigated Lathyrus taxa (µg/ml).


 
Section Orobus
 
Kupicha (1983) suggests that a few species which are included in section Orobus (here represented by L. aureus) are rather similar to the members of section Lathyrostylis. But results of present study showed the globulin B and glutelin band patterns of L. aureus (member of section Orobus)  to be distinct from the storage band patterns of the  members in section Lathyrostylis (five taxa) and Pratensis (two taxa). L. aureus has 19, 22, 28, 35, 45 and 28 kDa  globulin B bandings and the globulin band profile of L. aureus with 28 kDa is common with L. laxiflorus. The 32  kDa glutelin band profiles of L. aureus is also,less dense than other taxa (Fig 1 and 2). Thus, L. aureus is placed outer part of the clusters I (including five members of section Lathyrostylis studied herein) and II (consisting the studied two members of section Pratensis) according to the globulin B and glutelin (Fig 3 and 4). The phylogenetic of hypothesis which is derived from molecular characters presented in the study of Asmussen and Liston (1998) suggested that Kupicha’s section Orobus is monophyletic. However, Abou-El-Enain et al., (2007) claimed that the members of section Orobus in  the study (comprising L. aureus) are gathered with members of section Pratensis (including L. pratensis and L. laxiflorus subsp. laxiflorus) (Abou-El-Enain et al., 2007). Furthermore, the results of the present study disagree with those of Kenicer et al., (2005) for the reason that the authors place all the members of section Orobus (comprise L. aureus) in a clade with L. aphaca and L. laxiflorus (Kenicer et al., 2005).
 
Section Lathyrostylis
 
Members of Lathyrostylis share many characteristics with some species in section Orobus. Several researchers treat them as a part of a wider section Orobus (Czefranova, 1971; Kenicer et al., 2005). However, Bassler (1966) suggested the two sections to be different (Abou-El-Enain et al., 2007). Most of the following works concur with this delimitation (Davis et al., 1970; Dogan et al., 1992; Kenicer et al., 2005; Abou-El-Enain, 2007). This study showed that the members of section Lathyrostylis have common globulin B band profiles. But, 45 kDa globulin B banding of  L. spathulatus and 32 and 35 kDa globulin B banding of L. boissieri are less dense than other taxa (Fig 1 and 2).  The findings of the present study also indicate that the two sections are distinct and the members of section Lathyrostylis (L. brachypterus var. brachypterus, L. nivalis, L. digitatus, L. spathulatus and L. boissieri) are grouped together (Fig 3 and 4). Similarly, Oskoueiyan et al., (2014) found that L. aureus is placed in different clusters from species of Lathyrostylis. In addition, Oskoueiyan et al., (2014) suggested that L. digitatus, L. boissieri and L. brachypterus are clustered in the same group. On the other hand, Davis (1970) indicated that L. nivalis is superficially close to L. spathulatus. Electrophoretic data presented here suggested that glutelin (49.3% similarity) band patterns of L. nivalis are similar to L. spathulatus but similarity of globulin B (24.1% similarity) band patterns of afore--mentioned species are low (Fig 3 and 4). However, Gunes (2012) indicated that L. nivalis and L. spathulatus have different seed morphologies.
 
Section Pratensis
 
Kupicha (1983) indicated that the members of section Pratensis (here represented by L. pratensis and L. laxiflorussubsp. laxiflorus) form a well-defined group, sharing several distinctive characteristics. Current study demonstrated that the 28 kDa band pattern of L. pratensis is less dense than L. laxiflorus. This study also  showed that L. pratensis and L. laxiflorus have similar globulin B and glutelin band patterns (Fig 1 and 2). Findings of the present study showed that the members of section Pratensis are clearly clustered distinctly from both species of sections Orobus and Lathyrostylis as the electrophoretic band patterns reveal (Fig 3 and 4). These results well agreed with the studies rely on chloroplast DNA characters (Asmussen and Liston, 1998), seed surface characters (Abou-El-Enain et al., 2007) and petal micromorphology (Cildir et al., 2012). Similarly, Emre et al., (2006) suggested that L. pratensis and L. laxiflorus subsp. laxiflorus have a close affinity based on electrophoretic analysis of total seed proteins. Nevertheless, the findings of present study contrast with Dogan et al., (1992)’s morphological data; Dogan et al., (1992) indicated that L. pratensis and L. laxiflorus subsp. laxiflorus are located in different subgroups in cluster analysis.
Results of present study showed that the seed storage band patterns of L. aureus, which is a member of section Orobus, are distinct from the storage band patterns of the members in section Lathyrostylis. Thus, findings of present study have suggested that the two sections (section Orobus and Lathyrostylis) are distinct and the members of the section Lathyrostylis (L. brachypterus var. brachypterus, L. nivalis, L. digitatus, L. spathulatus and L. boissieri) are grouped together. Furthermore, the findings of the present study revealed that the members of the section Pratensis have a clearly distinct cluster from both species of sections Orobus and Lathyrostylis based on all electrophoretic band patterns. On the other hand, this study showed that L. nivalis has the highest globulin B and glutelin amounts and it has been found that the prolamin amounts of the studied taxa are the lowest.

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