- Acharjee, S., Sarmah, B.K. (2013). Biotechnologically generating ‘super chickpea’ for food and nutritional security. Plant Sci. 207: 108-116.
- Agarwal, P., Reddy, M.P., Chikara, J. (2011). WRKY: its structure, evolutionary relationship, DNA-binding selectivity, role in stress tolerance and development of plants. Mol. Biol. Rep. 38: 3883-3896.
- Chen, L., Song, Y., L.i, S., Zhang, L., Zou, C., Yu, D. (2012). The role of WRKY transcription factors in plant abiotic stresses, Biochimica et Biophysica Acta. 1819: 120-128.
- Chen, M., Tan, Q.P., Sun, M.Y., Li, D.M., Fu, X.L., Chen, XD., Xiao, W., Li, L., Gao, DS. (2016). Genome-wide identification of WRKY family genes in peach and analysis of WRKY expression during bud dormancy. Mol. Genet. Genomics. 291: 1319-332.
- Ciolkowski, I., Wanke, D., Birkenbihl, R.P., Somssich, I.E. (2008). Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function. Plant Mol. Biol. 68: 81-92. 10.1007/s11103-008-9353-1.
- Cormack, R.S., Eulgem, T., Rushton, P.J., Kochner, P., Hahlbrock, K., Somssich, I.E. (2002). Leucine zipper-containing WRKY proteins widen the spectrum of immediate early elicitor-induced WRKY transcription factors in parsley. Biochim. Biophys. Acta. 1576: 92-100.
- Drews, O., Reil, G., Parlar, H., Gorg, A. (2004). Setting up standards and a reference map for the alkaline proteome of the gram-positive bacterium Lactococcus lactis. Proteomics 4: 1293-1304.
- Duan, M.R., Nan, J., Liang, Y.H., Mao, P., Lu, L., Li, L., Wei, C., Lai, L., Li, Y., Su, X.D. (2007). DNA binding mechanism revealed by high resolution crystal structure of Arabidopsis thaliana WRKY1 protein. Nucleic Acids Res. 35: 1145-1154. 10.1093/nar/gkm001.
- Eulgem, T., Rushton, P.J., Robatzek, S., Somssich, I.E. (2000). The WRKY superfamily of plant transcription factors. Trends Plant Sci. 5: 199-206 10.1016/S1360-1385(00)01600-9.
- Finn, R.D., Tate, J., Mistry, J., Coggill, P.C., Sammut, S.J., Hotz, H.R., Ceric, G., Forslund, K., Eddy, S.R., Sonnhammer, E.L.L., Bateman, A. (2008). The Pfam protein families database. Nucleic Acids Res. 36: D281-D288.
- Guo, C., Guo, R., Xu, X., Gao, M., Li, X., Song, J., Wang, X.P. (2014). Evolution and expression analysis of the grape (Vitis vinifera L.) WRKY gene family. J. Exp. Bot. 65: 1513-1528.
- Han, Y., Gasic, K., Marron, B., Beever, J.E., Korban, S.S. (2007). A BAC based physical map of the apple genome. Genomics. 89: 630-637.
- He, H.S., Dong, Q., Shao, Y.H., Jiang, H.Y., Zhu, S.W., Cheng, B.J., Xiang, Y. (2012). Genome-wide survey and characterization of the WRKY gene family in Populus trichocarpa. Plant Cell. Rep. 31: 1199-1217.
- Hu, B., Jin, J., Guo, A., Zhang, H., Luo, J., Gao, G. (2015). GSDS 2.0: an upgraded gene feature visualization server. Bioinformatics 31: 1296-1297.
- Huang, S., Ding, J., Deng, D., Tang, W., Sun, H., Liu, D., Zhang, L., Niu, X., et al. (2013). Draft genome of the kiwifruit Actinidia chinensis. Nat. Commun. 4: 2640.
- Huang, S., Li, R., Zhang, Z., Li, L., Gu, X., Fan, W., Lucas, W.J., et al. (2009). The genome of the cucumber, Cucumis sativus L. Nat. Genet. 41: 1275-1281.
- Huang, S.X., Gao, Y.F., Liu, J.K, Peng, X.L., Niu, X.L., Fei, Z.J., Cao, S.Q., Liu, Y.S. (2012). Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum. Mol. Genet. Genom. 287: 495-513.
- Ishiguro, S., Nakamura, K. (1994). Characterization of a cDNA encoding a novel DNA-binding protein, SPF1, that recognizes SP8 sequences in the 5′ upstream regions of genes coding for sporamin and β-amylase from sweet potato. Mol. Gen. Genet. 244: 563-571.
- Jaillon, O., Aury, J.M., Noel, B., Policriti, A., Clepet, C., Casagrande, A. (2007). The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature. 449: 463-467.
- Jing, Z., Liu, Z. (2018). Genome-wide identification of WRKY transcription factors in kiwifruit (Actinidia spp.) and analysis of WRKY expression in responses to biotic and abiotic stresses. Genes Genomics. 40(4): 429-446. doi: 10.1007/s13258-017-0645-1.
- Kumar, K., Srivastava, V., Purayannur, S., Kaladhar, V., Cheruvu, P.J., Verma, P.K. (2016). WRKY domain-encoding genes of a crop legume chickpea (Cicer arietinum): comparative analysis with Medicago truncatula WRKY family and characterization of group-III gene(s), DNA Research: An International Journal for Rapid Publication of Reports on Genes and Genomes. 23: 225-239.
- Kumar, S., Stecher, G., Tamura, K. (2016). MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol. Biol. Evol. 33: 1870-1874.
- Letunic, I., Doerks, T., Bork, P. (2012). SMART 7: recent updates to the protein domain annotation resource. Nucleic Acid Res. 40: D302-D305.
- Li, J., Wang, J., Wang, N.X., Guo, X.Q., Gao, Z. (2015). GhWRKY44, a WRKY transcription factor of cotton, mediates defense responses to pathogen infection in transgenic Nicotiana benthamiana. Plant Cell Tissue Organ Cult. 121: 127-140.
- Ling, J., Jiang, W., Zhang, Y., Yu, H., Mao, Z., Gu, X., Huang, S., Xie, B. (2011). Genome-wide analysis of WRKY gene family in Cucumis sativus. BMC Genomics. 10.1186/ 1471-2164-12-471.
- Ma, J., Li, M.Y., Wang, F., Tang, J., Xiong, A. S. (2015). Genome-wide analysis of Dof family transcription factors and their responses to abiotic stresses in Chinese cabbage. BMC Evol. Biol. 8: 122-128.
- Mangelsen, E., Kilian, J., Berendzen, K., Kolukisaoglu, U., Harter, K., Jansson, C., Wanke, D. (2008). Phylogenetic and comparative gene expression analysis of barley (Hordeum vulgare) WRKY transcription factor family reveals putatively retained functions between monocots and dicots. BMC Genomics. 9: 194.
- MapInspect software. http://www.plantbreeding.wur.nl/ uk/software_ mapinspect.html.
- Marè, C., Mazzucotelli, E., Crosatti, C., Francia, E., Stanca, A.M., Cattivelli, L. (2004). Hv-WRKY38: a new transcription factor involved in cold- and drought-response in barley, Plant Mol Biol. 55: 399-416.
- Meng, D., Li, Y.Y., Bai, Y., Li, M.J., Cheng, L.L. (2016). Genome-wide identification and characterization of WRKY transcriptional factor family in apple and analysis of their responses to waterlogging and drought stress. Plant Physiol. Bioch. 103: 71-83.
- Muehlbauer, F.J., Sarker, A. (2017). Economic Importance of Chickpea: Production, Value and World Trade. In: The Chickpea Genome, Compendium of Plant Genomes, [Varshney RK, R Thudi M and Muehlbauer FJ (Eds.)], Springer International Publishing. pp. 05-12
- Pandey, S.P., Srivastava, S., Goel, R. Lakhwani, D., Singh, P., Asif, M.H., Sane, A.P. (2017). Simulated herbivory in chickpea causes rapid changes in defense pathways and hormonal transcription networks of JA/ethylene/GA/auxin within minutes of wounding. Sci. Rep. 7: 44729 doi: 10.1038/srep44729.
- Ramalingam, A., Kudapa, H., Pazhamala, L.T., Garg, V., Varshney, R.K. (2015). Gene expression and yeast two-hybrid studies of 1R-MYB transcription factor mediating drought stress response in chickpea (Cicer arietinum L.). Frontiers in Plant Science. 6. doi:10.3389/fpls.2015.01117.
- Ross, C.A., Liu, Y., Shen, Q.J. (2007). The WRKY gene family in rice (Oryza sativa). J. Integr. Plant Biol. 49: 827-842.
- Sakuma, Y., Liu, Q., Dubouzet, J. G., Abe, H., Shinozaki, K., Yamaguchi-Shinozaki, K. (2002). DNA-binding specificity of the ERF/AP2 domain of arabidopsis DREBs, transcription factors involved in dehydration and cold-inducible gene expression. Biochemical and Biophysical Research Communications. 290: 998-1009. doi:10.1006/bbrc.2001.6299
- Sani, S., G.A.S., Chang, P.L., Zubair, A., Carrasquilla-Garcia, N., Cordeiro, M., Penmetsa, R.V., Munis, M.F.H., Nuzhdin, S.V., Cook, D.R., von Wettberg, E.J. (2018). Genetic diversity, population structure and genetic correlation with climatic variation in chickpea (Cicer arietinum L.) landraces from Pakistan. Plant Genome. 11: 170067.
- Seki, M., Narusaka, M., Ishida, J., Nanjo, T., Fujita, M., Oono, Y., Kamiya, A., Nakajima, M., Enju, A., Sakurai, T., Satou, M., Akiyama, K., Taji, T., Yamaguchi-Shinozaki, K., Carninci, P., Kawai, J., Hayashizaki, Y., Shinozaki, K. (2002). Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant Journal. 279-292.
- Shiu, Shin-Han., Bleecher, A.B. (2003). Expansion of the receptor-like Kinase/Pelle gene family and receptor-like proteins in arabidopsis. Plant Physiology 132: 530-543.
- Song, H., Wang, P., Hou, L., Zhao, S., Zhao, C., Xia, H., Li, P., Zhang, Y., Bian, Wang X. (2016). Global analysis of WRKY genes and their response to dehydration and salt stress in soybean. Front Plant Sci. 7: 9.
- Thudi, M., Khan, A.W., Kumar, V., Gaur, P.M., Katta, K., Garg, V., Roorkiwal, M., Samineni, S., Varshney, R.K. (2016). Whole genome re-sequencing reveals genomewide variations among parental lines of 16 mapping populations in chickpea (Cicer arietinum L.). BMC Plant Biol. 16-10.
- Unkovich. M.J. Pate, J.S. (2000). An appraisal of recent field measurements of symbiotic N2 fixation by annual legumes. Field Crops Research. 65(2-3): 211-228.
- Varshney, R.K., Song, C., Saxena, R.K., Azam, S., Yu, S., Sharpe, A.G., et al. (2013). Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nat Biotechnol. 31: 240-246. doi:10.1038/nbt.2491
- Varshney, R.K., Mohan, S.M., Gaur, P.M., Gangarao, N.V., Pandey, M.K., Bohra, A., et al. (2013). Achievements and prospects of genomics assisted breeding in three legume crops of the semi-arid tropics. Biotechnol. Adv. 31: 1120-1134.
- Wang, L., Yu, S., Tong, C., Zhao, Y., Liu, Y., Song, C., Zhang, Y., et al. (2014). Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis. Genome Biol. 10.1186/gb-2014-15-2-r39.
- Wang, N., Xia, E.H., Gao, L.Z. (2016). Genome-wide analysis of WRKY family of transcription factors in common bean, Phaseolus vulgaris: chromosomal localization, structure, evolution and expression divergence. Plant Gene. 5: 22-30.
- Wei, K.F., Chen, J., Chen, Y.F., Wu, L.J., Xie, D.X. (2012). Molecular phylogenetic and expression analysis of the complete WRKY transcription factor family in maize. DNA Res. 10.1093/dnares/dsr048.
- Wu, X., Shiroto, Y., Kishitani, S., Ito, Y., Toriyama, K. (2009). Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter. Plant Cell Rep. 28: 21-30. doi: 10.1007/s00299-008-0614-x.
- Wu, Z.J., Li, X.H., Liu, Z.W., Li, H., Wang, Y.X., Zhuang, J. (2016). Transcriptome-wide identification of Camellia sinensis WRKY transcription factors in response to temperature stress. Mol Genet. Genom. 29: 255-269.
- Xie, Z., Zhang, ZL., Zou, X., Huang, J., Ruas, P., Thompson, D., Shen, J.S. (2005). Annotations and functional analyses of the rice WRKY gene superfamily reveal positive and negative regulators of abscisic acid signaling in aleurone cells. Plant Physiology. 137: 176-189. DOI: 10.1104/ pp.104.054312.
- Xin, P.F., Gao, C.S., Cheng, C.H., Tang, Q., Dong, Z.X., Zhao, L.N., Zang, G.G. (2016). Identification and characterization of hemp WRKY transcription factors in response to abiotic stresses. Biol. Plantarum. 60: 489-495.
- Xiong, W., Xu, X., Zhang, L., Wu, P., Chen, Y., Li, M., Jiang, H., Wu, G. (2013). Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.). Gene. 524: 124-132.
- Yamasaki K., Kigawa T., Inoue M., Tateno M., Yamasaki T., Yabuki T., Aoki, M., et al. (2005). Solution structure of an Arabidopsis WRKY DNA binding domain. Plant Cell. 17. 944-956.
- Yamasaki K., Kigawa T., Watanabe S., Inoue M., Yamasaki T., Seki M., Shinozak, K., Yokoyama, S. (2012). Structural basis for sequence-specific DNA recognition by an Arabidopsis WRKY transcription factor. J. Biol. Chem. 287: 7683-7691 10.1074/jbc.M111.279844.
- Yu, Y., Wang, N., Hu, R., Xiang, F. (2016). Genome-wide identification of soybean WRKY transcription factors in response to salt stress. Spring. 10.1186/s40064-016-2647-x.
- Zou, Z., Yang, L., Wang, D., Huang, Q., Mo, Y., Xie, G. (2016). Gene structures, evolution and transcriptional profiling of the WRKY gene family in castor bean (Ricinus communis L.). PLoS ONE. 11: e0148243.
Submitted Date : 17-02-2020
Accepted Date : 29-10-2020
First Online: