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Current IssueEditorial BoardOnline First ArticlesArchive

Research Article

volume 42 issue 2 (april 2019) : 137-144,   Doi: 10.18805/LR-409

Molecular markers and genomic resources for disease resistance in peanut-A review

D
Divya Choudhary
G
Gaurav Agarwal
H
Hui Wang
M
Manish K. Pandey
A
Albert K. Culbreath
R
Rajeev K. Varshney
B
Baozhu Guo
1USDA-Agricultural Research Service, Crop Protection and Management Research Unit, Tifton, GA, 31793, USA.

  • Submitted13-02-2018|

  • Accepted28-06-2018|

  • First Online 15-11-2018|

  • doi 10.18805/LR-409

Cite article:- Choudhary Divya, Agarwal Gaurav, Wang Hui, Pandey K. Manish, Culbreath K. Albert, Varshney K. Rajeev, Guo Baozhu (2018). Molecular markers and genomic resources for disease resistance in peanut-A review. Legume Research. 42(2): 137-144. doi: 10.18805/LR-409.

ABSTRACT

Recent polyploidation of peanut genome and geographical isolation has rendered peanut to be a highly monomorphic species. Due to its narrow genetic base, cultivated peanut has been susceptible to various diseases, causing economic loss to farmers. Availability of only a few disease resistance sources in cultivated peanut has resulted in limited success using the conventional breeding practices. Also, scarcity of markers has been the major limiting factor to precisely identify the disease resistance genomic regions. Recent identification of large number of molecular markers using advanced genomic resources and high throughput sequencing technologies has and will continue to assist in improvement of peanut diversity and breeding. This review gives an update on recent discovery of molecular markers associated with major diseases and the available genomic resources in peanut.

REFERENCES

  1. Abe, A., Kosugi, S., Yoshida, K., Natsume, S., Takagi, H., Kanzaki, H., Matsumura, H. et al. (2012). Genome sequencing reveals agronomically important loci in rice using MutMap. Nature Biotechnol. 30:174-178.
  2. Agarwal, G., Clevenger, J., Pandey, M.K., Wang, H., Shasidhar, Y., Chu, Y., Fountain, J.C., Choudhary, D., Culbreath, A.K., Liu, X., Huang, G., Wang, X., Deshmukh, R., Holbrook, C.C., Bertioli, D.J., Ozias-Akins, P., Jackson, S.A., Varshney, R.K., Guo, B. (2018). High€ density genetic map using whole€ genome re€ sequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnol. J. doi.org/10.1111/pbi.12930.
  3. Baltensperger, D.D., Dunn, R.A., Prine, G.M. (1986). Root-knot nematode resistance in Arachis glabrata. Peanut Sci.13:78-80.
  4. Bertioli, D.J., Cannon, S.B., Froenicke, L., Huang, G., Farmer, A.D., Cannon, E.K.S., Liu, X. et al. (2016). The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genet. 48:438-446. 
  5. Bertioli, D.J., Leal-Bertioli, S.C.M., Lion, M.B., Santos, V.L., Pappas, G.J., Cannon, S.B., Guimaraes, P.M. (2003). A large scale analysis of resistance gene homologues in Arachis. Mol. Genet. Genomics.270:34-45.
  6. Bosamia, T.C., Mishra, G.P., Radhakrishnan, T., Dobaria, J.R. (2015). Novel and stress relevant EST derived SSR markers developed and validated in peanut. PLoS One.10: e0129127. doi.org/10.1371/journal.pone.0129127
  7. Burow, M.D., Simpson, C.E., Paterson, A.H., Starr, J.L. (1996). Identification of peanut (Arachis hypogaea L.) RAPD markers diagnostic of root-knot nematode (Meloidogyne arenaria (Neal) Chitwood) resistance. Mol. Breed. 2:369-379.
  8. Burow, M.D., Simpson, C.E., Starr, J.L., Paterson, A.H. (2001). Transmission genetics of chromatin from a synthetic amphidiploid to cultivated peanut (Arachis hypogaea L.): broadening the gene pool of a monophyletic polyploid species. Genet. 159:823-837.
  9. Chen, X., Li, H., Pandey, M.K., Yang, Q., Wang, X., Garg, V., Li, H. et al. (2016). Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens. Proc. Nat. Acad. Sci. U.S.A.113:6785-6790.
  10. Choi, K., Burow, M.D., Church, G., Burow, G., Paterson, A.H., Simpson, C.E., Starr, J.L. (1999). Genetics and mechanism of resistance to Meloidogyne arenaria in peanut germplasm. J. Nematol. 31:283-290.
  11. Chu, Y., Wu, C.L., Holbrook, C.C., Tillman, B.L., Person, G., Ozias-Akins, P. (2011). Marker-assisted selection to pyramid nematode resistance and the high oleic trait in peanut. Plant Genome. 4:110-117.
  12. Church, G.T., Simpson, C.E., Burow, M.D., Paterson, A.H., Starr, J.L. (2000). Use of RFLP markers for identification of individuals homozygous for resistance to Meloidogyne arenaria in peanut. Nematol. 2:575-580.
  13. Clevenger, J., Chu, Y., Chavarro, C., Agarwal, G., Bertioli, D.J., Leal-Bertioli, S.C.M. Pandey, M.K. et al. (2017). Genome-wide SNP genotyping resolves signatures of selection and tetrasomic recombination in peanut. Mol. Plant. 10:309-322.
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    Research Article

    volume 42 issue 2 (april 2019) : 137-144,   Doi: 10.18805/LR-409

    Molecular markers and genomic resources for disease resistance in peanut-A review

    D
    Divya Choudhary
    G
    Gaurav Agarwal
    H
    Hui Wang
    M
    Manish K. Pandey
    A
    Albert K. Culbreath
    R
    Rajeev K. Varshney
    B
    Baozhu Guo
    1USDA-Agricultural Research Service, Crop Protection and Management Research Unit, Tifton, GA, 31793, USA.

    • Submitted13-02-2018|

    • Accepted28-06-2018|

    • First Online 15-11-2018|

    • doi 10.18805/LR-409

    Cite article:- Choudhary Divya, Agarwal Gaurav, Wang Hui, Pandey K. Manish, Culbreath K. Albert, Varshney K. Rajeev, Guo Baozhu (2018). Molecular markers and genomic resources for disease resistance in peanut-A review. Legume Research. 42(2): 137-144. doi: 10.18805/LR-409.

    ABSTRACT

    Recent polyploidation of peanut genome and geographical isolation has rendered peanut to be a highly monomorphic species. Due to its narrow genetic base, cultivated peanut has been susceptible to various diseases, causing economic loss to farmers. Availability of only a few disease resistance sources in cultivated peanut has resulted in limited success using the conventional breeding practices. Also, scarcity of markers has been the major limiting factor to precisely identify the disease resistance genomic regions. Recent identification of large number of molecular markers using advanced genomic resources and high throughput sequencing technologies has and will continue to assist in improvement of peanut diversity and breeding. This review gives an update on recent discovery of molecular markers associated with major diseases and the available genomic resources in peanut.

    REFERENCES

    1. Abe, A., Kosugi, S., Yoshida, K., Natsume, S., Takagi, H., Kanzaki, H., Matsumura, H. et al. (2012). Genome sequencing reveals agronomically important loci in rice using MutMap. Nature Biotechnol. 30:174-178.
    2. Agarwal, G., Clevenger, J., Pandey, M.K., Wang, H., Shasidhar, Y., Chu, Y., Fountain, J.C., Choudhary, D., Culbreath, A.K., Liu, X., Huang, G., Wang, X., Deshmukh, R., Holbrook, C.C., Bertioli, D.J., Ozias-Akins, P., Jackson, S.A., Varshney, R.K., Guo, B. (2018). High€ density genetic map using whole€ genome re€ sequencing for fine mapping and candidate gene discovery for disease resistance in peanut. Plant Biotechnol. J. doi.org/10.1111/pbi.12930.
    3. Baltensperger, D.D., Dunn, R.A., Prine, G.M. (1986). Root-knot nematode resistance in Arachis glabrata. Peanut Sci.13:78-80.
    4. Bertioli, D.J., Cannon, S.B., Froenicke, L., Huang, G., Farmer, A.D., Cannon, E.K.S., Liu, X. et al. (2016). The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genet. 48:438-446. 
    5. Bertioli, D.J., Leal-Bertioli, S.C.M., Lion, M.B., Santos, V.L., Pappas, G.J., Cannon, S.B., Guimaraes, P.M. (2003). A large scale analysis of resistance gene homologues in Arachis. Mol. Genet. Genomics.270:34-45.
    6. Bosamia, T.C., Mishra, G.P., Radhakrishnan, T., Dobaria, J.R. (2015). Novel and stress relevant EST derived SSR markers developed and validated in peanut. PLoS One.10: e0129127. doi.org/10.1371/journal.pone.0129127
    7. Burow, M.D., Simpson, C.E., Paterson, A.H., Starr, J.L. (1996). Identification of peanut (Arachis hypogaea L.) RAPD markers diagnostic of root-knot nematode (Meloidogyne arenaria (Neal) Chitwood) resistance. Mol. Breed. 2:369-379.
    8. Burow, M.D., Simpson, C.E., Starr, J.L., Paterson, A.H. (2001). Transmission genetics of chromatin from a synthetic amphidiploid to cultivated peanut (Arachis hypogaea L.): broadening the gene pool of a monophyletic polyploid species. Genet. 159:823-837.
    9. Chen, X., Li, H., Pandey, M.K., Yang, Q., Wang, X., Garg, V., Li, H. et al. (2016). Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens. Proc. Nat. Acad. Sci. U.S.A.113:6785-6790.
    10. Choi, K., Burow, M.D., Church, G., Burow, G., Paterson, A.H., Simpson, C.E., Starr, J.L. (1999). Genetics and mechanism of resistance to Meloidogyne arenaria in peanut germplasm. J. Nematol. 31:283-290.
    11. Chu, Y., Wu, C.L., Holbrook, C.C., Tillman, B.L., Person, G., Ozias-Akins, P. (2011). Marker-assisted selection to pyramid nematode resistance and the high oleic trait in peanut. Plant Genome. 4:110-117.
    12. Church, G.T., Simpson, C.E., Burow, M.D., Paterson, A.H., Starr, J.L. (2000). Use of RFLP markers for identification of individuals homozygous for resistance to Meloidogyne arenaria in peanut. Nematol. 2:575-580.
    13. Clevenger, J., Chu, Y., Chavarro, C., Agarwal, G., Bertioli, D.J., Leal-Bertioli, S.C.M. Pandey, M.K. et al. (2017). Genome-wide SNP genotyping resolves signatures of selection and tetrasomic recombination in peanut. Mol. Plant. 10:309-322.
    14. Food Agriculture Organization of United Nations (2014). Available online at: http://faostat.fao.org/DesktopDefault.aspx?PageID=339
    15. Fu, G., Zhong, Y., Li, C., Li, Y., Lin, X., Liao, B., Tsang, E.W. et al. (2010). Epigenetic regulation of peanut allergen gene Arah3 in developing embryos. Planta. 231:1049-1060.
    16. Garcia, G.M., Stalker, H.T., Shroeder, E., Kochert, G. (1996). Identification of RAPD, SCAR and RFLP markers tightly linked to nematode resistance genes introgressed from Arachis cardenasii into Arachis hypogaea. Genome.39:836-845.
    17. Guo, B., Chen, X., Dang, P., Scully, B.T., Liang, X., Holbrook, C.C., Yu, J., Culbreath, A.K. (2008). Peanut gene expression profiling in developing seeds at different reproduction stages during Aspergillus parasiticus infection. BMC Dev. Biol.8:12.
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