The predicted growth curve in Corriedale sheep for 360 days against the observed 5 data points is depicted in Fig 1. Table 1 summarizes the descriptive statistics for the body weight traits of Corriedale sheep. The least-squares mean (LSM) for BW, WW, 6M, 9M and 12M were 3.55±0.04, 11.31±0.27, 17.76±0.30, 18.88±0.17 and 22.97±0.34 Kg, respectively. The non-genetic factors
viz. period and season of birth, sex of lambs and parity of ewes were significant on all the traits under study. The body weight measurements at specific time points were utilized as repeated measures for each animal along the growth curve. As age progressed, the number of records declined due to factors such as culling and mortality. The number of animals with at least 3, 4 and 5 records were 3780 (68.1%), 3081 (55.5%) and 2494 (44.9%), respectively. The model comparison criteria are detailed in Table 2 and 3. The R4334 model, with a 4
th-order fit for direct genetic and individual permanent environmental effects, a 3
rd-order fit for maternal genetic and maternal permanent environmental effects and five heterogeneous residual variances, was selected as the best-fit model.
The eigenvalues corresponding to the intercept, linear, quadratic and cubic coefficients from the best model are presented in Table 4. The eigenfunctions, derived from the eigenvectors of the genetic variance-covariance matrix
(Kirkpatrick et al., 1990) provide valuable insights into the selection effect along the growth trajectory (
Lewis and Brotherstone, 2002). The first eigenfunction for the direct additive genetic effect accounted for 91% of the total genetic variation suggesting selection based on this primary growth pattern would lead to improvement across all ages (Fig 2).
Variance ratios (heritabilities) for body weights at different ages are shown in Table 5. The heritability estimates derived from RRM for growth at BW, WW, 6M, 9M and 12M were 0.22±0.03, 0.21±0.03, 0.18±0.02, 0.32±0.03, 0.28±0.03, respectively. The body weight correlations were calculated using the respective genetic covariance matrices at different ages (Table 6, 7 and 8). A positive relationship was observed in the estimates of body weights across distinct age classes, except for the birth weight estimates when compared to live weights at 6, 9 and 12 months of age.
This study successfully modeled the growth curve of the Corriedale sheep using a random regression model and demonstrated its usefulness for estimating genetic parameters at any point in the growth curve. The model selection process, based on LRT, AIC and BIC identified R4334 as the optimal model.
The analysis started with a polynomial order of 2 for all random effects, sequentially increasing up to order 4. Different random regression models had varying polynomial orders, but consistent fixed effects to model random effects. The R4334 model emerged as the best-fit model based on LRT, AIC and BIC (Table 2 and 3). This model featured a polynomial order of 4 for random effects (Animal direct and environment effect) and order 3 for (Maternal genetic and permanent environmental effect) with 5 distinct levels of heterogeneous residual variance components. The likelihood ratio test (LRT) revealed that adding complexity to the models can significantly enhances the model’s ability to explain the data. Further evaluations with more complex models R4444 and R4434 either showed no significant improvement or resulted in a worse fit, confirming that additional complexity beyond RR4334 isn’t justified. Therefore, RR4334 emerges as the most effective model, providing the best balance between fit and complexity without the risk of overfitting.
The direct additive genetic effect shows a high and positive intercept of 91%, explaining most of the variance (Fig 2). Our findings are consistent with
(Fischer et al., 2004; Ghafouri-Kesbi et al., 2008;
Kariuki et al., 2010, Barazandeh et al., 2012, Mohammadi and Farhadian, 2017,
Ghiasi and Mokhtari, 2018;
Mahala et al., 2020). The linear coefficient linked to additive genetic, maternal genetic, maternal permanent environmental and individual permanent environmental accounted for 5.65, 1.42, 0.51 and 11.07 per cent of the total variation, respectively.
The first eigen function of eigenvalue accounted for 91% of the additive genetic variation across different ages. The trajectory for this function indicated positive and upward trend as age increased. This suggests that focusing on this aspect of variation provides scope for overall improvement at all ages.
Lewis and Brotherstone (2002) found similar findings regarding the first eigen function in Suffolk sheep. The 2
nd and 3
rd eigenvalues for the direct additive genetic effect were significantly lower, indicating a limited potential for genetic improvement in animal growth through selection based on these eigen functions. The second Eigen function was positive until about three months and negative thereafter. However,
Venkataramanan (2016) reported a consistent trend with positive values and a slight increase in the trajectories for both the first and second Eigenvalues. The 3
rd eigenfunction showed a decreasing trend up to 9 months and thereafter linearly positive up to twelve months. The 4
th eigenfunction started with a negative value, became positive at weaning, thereafter showed decreasing trend until nine months and finally increased linearly up to twelve months of age. Both the third and fourth eigenfunctions didn’t exhibit much variability, meaning they contributed very little to the overall variation in the trait. The polynomial orders for RRM were established based on recommendations from earlier studies on growth (
Meyer, 2004;
Fischer et al., 2004; Molina et al., 2007; Ghafouri-Kesbi et al., 2008;
Mahala et al., 2020). Beyond this point, using higher-order polynomials led to computational issues with convergence, likely due to the limited number of records available at older ages, as noted by
Arango et al. (2004).
In this study, the highest estimates of direct heritability were found at 09 months of age. In contrast, the heritability trends were not consistent with previous findings
(Fischer et al., 2004; Venkataramanan, 2016), which reported a steady increase in direct heritability up to 12 months of age. The high heritability at 9M indicates that this age is under strong genetic control and is an ideal time to make a selection decision in this population. The variance attributed to maternal genetic and maternal permanent environmental factors throughout the growth trajectory were quite low, suggesting that while maternal influence on birth weight was present, it diminished after weaning in RRM. Several researchers
(Molina et al., 2007; Ghafouri-Kesbi et al., 2008;
Mahala et al., 2020) have also noted a decline in maternal genetic and permanent environmental effects as the animals aged. It’s worth mentioning that some studies have reported higher estimates than ours, likely due to differences in breed
(Barazandeh et al., 2012; Kheirabadi and Rashidi, 2016;
Venkataramanan, 2016). Nonetheless, our findings indicate that after weaning, an animal’s genotype plays a more significant role in determining body weight compared to other random effects.
The individual permanent environmental variance contributed the most to the variance in growth traits with highest estimate at nine months of age. This could be attributed to the potential overestimation of additive effects in later ages, possibly due to end-effect of polynomials in Random Regression Model (
Ghafouri-Kesbi et al., 2008).
Consistent with our findings
(Fischer et al., 2004; Kariuki et al., 2010; Barazandeh et al., 2012; Mahala et al., 2020) showed similar trends in phenotypic correlation, The genetic correlations between the youngest and oldest were generally low to moderate, while it was higher between subsequent ages. This pattern aligns with previous studies on genetic correlation for growth data using RRM (
Lewis and Brotherstone, 2002;
Fischer et al., 2004; Aziz et al., 2005; Ghafouri-Kesbi et al., 2008;
Barazandeh et al., 2012; Venkataramanan, 2016;
Mahala et al., 2020). The findings of our study support earlier findings (
Ghafouri-Kesbi et al., 2008;
Venkataramanan, 2016), suggesting that maternal effects at a younger age are influenced by different genes than those expressed at a later age.