Molecular Characterization and PCR-based Detection of Brucella abortus Clinical Isolates from Cattle in Maharashtra, India

M
Madhuri Hedau1,*
J
Jaya Singh1
N
Naina Singh1
M
Megha Kaore1
S
S.P. Chaudhar2
V
Varsha thorat3
N
N.V. Kurkure1
1Department of Veterinary Pathology, Nagpur Veterinary College, Nagpur-440 006, Maharashtra, India.
2Department of Veterinary Public Health, Nagpur Veterinary College, Nagpur-440 006, Maharashtra, India.
3Department of Veterinary Microbiology, Mumbai Veterinary College, Mumbai Maharashtra Animal and Fishery Sciences University, Nagpur-440 006, Maharashtra, India.

Background: Brucellosis is an important zoonotic disease in several parts of the world including India. The current study was undertaken for molecular characterization and PCR-based detection of Brucella species of cattle from Maharashtra, India.

Methods: A total of 220 clinical samples (vaginal swabs and placental tissues) were collected from cattle of various organized and unorganized farms from different regions of Maharashtra. These samples were processed for isolation of Brucella organisms and further characterized by PCR and sequencing.

Result: A total of 10 Brucella isolates were recovered from 220 samples (5.54%). BCSP 31  and 16S rRNA PCR showed an amplicon of 223 and 1412 bp in 10 isolates respectively. Species identification was performed using IS711 PCR, conventional methodology, Bruce-ladder PCR and AMOS PCR. During the study period, a total of ten isolates from vaginal swab and placental tissues of cattle were identified as Brucella abortus. The phylogenetic analysis detected the close relationship of the organism with that of isolate from Italy. Correct and timely diagnosis of brucellosis is important for control of  disease. The molecular methods used in the current study aided to speed up the diagnosis of the disease.

Brucella spp. are Gram negative facultative intracellular bacteria that are causative agents of brucellosis. Brucellosis is a major infectious disease of livestock and a re-emerging zoonotic disease in several developing countries including India (Shome et al., 2017). Brucellosis is an important cause of veterinary morbidity and mortality and responsible for economic losses in developing countries (Franco et al., 2007). Infection in cattle is mainly caused by Brucella abortus and the economic losses associated with bovine brucellosis are primarily related to various reproductive problems, perinatal mortality and chronic or diffuse interstitial mastitis (Corbel et al., 2006; OIE, 2009). Brucellosis prevalence among livestock animals varies widely across India, differing from region to region and farm to farm (Jaismon et al., 2023). Current laboratory diagnostic tests for brucellosis include the serological tests and cultural examination. However, these serological tests are not very sensitive or specific to be used for diagnosis. PCR- based assays proved to be more accurate and sensitive compared to traditional bacteriological methods used for the identification of Brucella species at the biovar level and can identify low amounts of Brucella DNA (Ullah et al., 2024). Improved laboratory diagnosis is possible due to developments in culture and serological methods and the availability of advanced molecular detection and typing methods. These molecular methods could serve as important alternatives to culture methods for the confirmation of the disease and may be a valuable epidemiological tools to trace sources of infection. Samples collected in this study were taken through various PCR assays to identify B. abortus at genus and species level. PCR-positive samples were subjected to sequencing in order to confirm the presence of B. abortus and to determine the relationships between the various stains. It can be concluded that this work is useful for expanding knowledge related to molecular characteristics of brucellosis in cattle of Maharashtra, India.
Prior to the start of collection of samples, experimental protocol was approved by the Institutional Animal Ethics Committee (IAEC) and Institutional Bio-safety Committee (IBSC) of Nagpur Veterinary College, Nagpur, India.
 
Reference strain
 
Reference strain included B. abortus S99 (VTCCBAA465) obtained from National Centre for Veterinary Type Cultures (NCVTC), Hisar, Haryana. B. abortus S99 and E. coli strain were used as positive and negative controls, respectively.
 
Collection of sample
 
The farms having history of abortion were selected for the present study. A total of 220 samples (vaginal swabs and placental tissues) were collected from cattle of various organized and unorganized farms from different regions of Maharashtra state for the detection and isolation of Brucella spp.
 
Processing of specimens by conventional and molecular methods
 
The vaginal swabs and placental tissues were processed for isolation of Brucella by conventional methods. The isolates suspected of Brucella were screened by biochemical tests for identification (OIE, 2009). The isolates recovered were further subjected to PCR. The placental tissue samples were also used for direct DNA extraction and further characterized by PCR assays. The extraction of genomic DNA of B. abortus from the bacterial cultures, Brucella reference strain and placental tissue was carried out by using the HiPurA® Multi-Sample DNA Purification Kit (HiMedia) as per the manufacturer’s protocol. The extracted DNA was quantified spectrophotometrically using nanodrop spectrophotometer (Eppendorf).
 
BCSP 31, 16S rRNA, IS711, AMOS and Bruce-ladder PCR assays
 
The BCSP 31 and 16S rRNA PCR was carried out on isolates and clinical samples to detect Brucella at genus level with primers mentioned in Table 1 (Baily et al., 1992; Singh et al., 2013). The genus was re-confirmed using conventional methodologies and protocols (OIE, 2009). Brucella species identification was performed using IS711 PCR and AMOS-PCR by using specific primers of B. abortus, B. melitensis, B. ovis and B. suis which are listed in Table 1 (Bricker and Halling, 1994; Sonekar et al., 2018). Species identification and differentiation of B. abortus was also performed using the Bruce-ladder multiplex PCR protocol using a set of eight primer pairs mentioned in Table 1 (Garcia-Yoldi et al., 2006). The BCSP31, 16S rRNA, IS711, AMOS and Bruce-ladder PCR were set in a final volume of 25 μl as mentioned in Table 2. PCR reactions were carried out in thermal cycler (Eppendorf, vapo.protect) as per cycling conditions mentioned in Table 3. The amplified BCSP31, 16S rRNA, IS711, AMOS and Bruce-ladder PCR products were visualized in ethidium bromide-stained 1.5% agarose gel under Automatic Computerized Gel Documentation and Analysis System (Gel Doc, Syngene). A molecular weight marker with 100 bp and 1kb increments (Himedia) were used as a DNA standard.

Table 1: Primer sequences used in the present study.



Table 2: PCR reaction mixture for BCSP 31, 16s rRNA, IS711, AMOS and Bruce-ladder PCR.



Table 3: Cycling conditions for BCSP 31, IS711, Bruce-ladder PCR, AMOS PCR and 16s rRNA PCR.


 
Sequence and phylogenetic analysis
 
PCR products IS711 of three Brucella isolates were submitted for sequencing to Eurofins Genomics India Pvt. Ltd, Banglore (India). The sequences were blast using blast search of NCBI for identity of sequences. Both the sequences were aligned and consensus sequence was prepared with Bioedit (www.mbio.ncsu.edu/BioEdit/bioedit.html). The alignment was carried out with Clustal W of MEGA 7.0 and the phylogenetic tree was constructed based on Brucella abortus sequences by neighbor joining method in MEGA 7.0 (Kumar et al., 2016). 
In the present study, molecular characterization of Brucella abortus clinical isolates from cattle in Maharashtra, India was carried out.
 
Laboratory findings
 
A total of 10 Brucella isolates were recovered from 220 clinical samples with 4.54% isolation rate. Seven isolates were derived from vaginal swabs and three isolates were obtained from placental tissue. All the isolates exhibited morphology and staining characteristics typical of Brucella spp., i.e. they were Gram- negative coccobacilli, acid-fast in MZN staining. The Colonies were round, glistening, smooth and mucoid on BAM (Fig 1); non-lactose fermenting on MacConkey agar and non-haemolytic on blood agar. All cultures on Brucella agar medium were typical isolates of Brucella in morphology, colonial appearance and characteristics of growth. The isolates recovered were further confirmed as members of Brucella spp. employing different biochemical tests. All isolates produced oxidase, indole, urease, H2S and reduced nitrate.

Fig 1: Brucella abortus on Brucella specific agar.


 
PCR analysis
 
All the 10 isolates and the reference strain B. abortus S99 showed BCSP31 gene-specific amplicon of 223 bp and 16S rRNA specific amplicon of 1412 bp confirming their identity as members of genus Brucella (Fig 2 and 3). In IS711 PCR, B. abortus S99 and 10 clinical isolates generated a product of 498 bp, confirming the isolates as B. abortus (Fig 4). All of the 10 Brucella isolates were identified as B. abortus using the AMOS-PCR method (Fig 5). The Bruce-ladder PCR identified all the ten isolates as B. abortus by amplifying genes crp, bp26, eryC, pda and wboA of 152 bp, 450 bp, 587 bp, 794 bp and 1682 bp respectively (Fig 6).

Fig 2: Identification of field isolates of Brucella spp. by BCSP 31 PCR.



Fig 3: Identification of field isolates of Brucella spp. by 16S rRNA PCR.



Fig 4: Identification of Brucella abortus by IS711 PCR assay.



Fig 5: Identification of B. abortus by AMOS PCR.



Fig 6: Identification of B. abortus by Bruce-ladder PCR.


 
Molecular characterization of Brucella abortus by nucleotide sequencing
 
Three isolates were subjected to sequencing of 498 bp amplicon of IS711 gene. It was observed that amplicons of the IS711 gene of the three isolates of B. abortus had 99 to 100% homology with the available sequences of B. abortus in NCBI. Results of phylogenetic analysis indicated that B. abortus isolates i.e. NGP1, NGP2 and NGP3, showed similarity with isolates from Italy (Fig 7).

Fig 7: Phylogenetic tree of Brucella isolates based on IS711 sequences.


       
Brucellosis is considered one of the world’s most serious zoonotic diseases which causes enormous economic losses in both developed and developing countries. The disease has disseminated worldwide, despite massive attempts to eradicate it in many countries (Elrashedy et al., 2022). Several workers in India have attempted isolation of Brucella spp. with varying rates of isolation. Recovery of 30% isolates from abomasal contents of aborted foetuses, 16% isolates from foetal tissues and 8.42% from vaginal swabs have been reported earlier (Thorat and Bannalikar, 2022). Isolation of B. abortus in 8.92% cases of bovine while B. abortus from vaginal swabs in 15% cases have also been reported by various workers (Jeyaprakash et al., 1999; Shrimali et al., 2017). In the present study, isolation rate was relatively low (4.54%) than the previous reports. However, isolation rate of 4.4% for bovine brucellosis appear to similar as reported by Mittal et al., (2018) might be due the slow growth and fastidious nature of the Brucella spp (Seleem et al., 2010; Patel et al., 2017). While India, prevalence of brucellosis in animals is ranging from low to moderate, however, the isolation rate of Brucella spp. from clinical samples of animals tends to be low. While many animals may test positive for antibodies to Brucella (seropositive), the actual bacteria are not frequently isolated from them which can be attributed to factors like the stage of infection, the type of sample tested etc. Isolation data and clinical pictures indicated that typically isolates were obtained from vaginal swabs of animals with a history of late pregnancy abortion (7-9 months). In the present study, only animals with a history of abortion were sampled to increase the probability of detecting Brucella-infected animals. The presence of Brucella in vaginal swabs of cattle has been recorded in other studies (Thorat and Bannalikar, 2022; Efrem et al., 2024). Hence, the presence of Brucella in the vagina signifies that the Veterinarians and farmers managing difficult calvings and retained placenta cases in cows should use personal protective equipment (Mengele et al., 2024). Furthermore, a large number of animals (n=210) with a recent history of abortion were negative on cultural examination. In these cases, other factors and infectious agents can induce abortion at different stages of the gestation period and abortion was not necessarily caused by Brucella infection (Efrem et al., 2024). All the 10 isolates obtained in the present investigation were initially confirmed by the cultural, morphological and biochemical tests as Brucella species (Koneman et al., 1997). The BCSP31 and 16S rRNA PCR assay detected all the isolates as Brucella at genus level. Similar efficacy of the BCSP31 primers in detecting Brucella organism at the genus level was previously recorded (Kaur et al., 2018; Thorat and Bannalikar, 2022). In the present study, 16S rRNA gene amplification was used as a rapid confirmatory identification tool for Brucella genus (Singh et al., 2013). The results of IS711 assay recorded in the present investigation agree with the findings of earlier researchers (Awwad et al., 2015; Thorat and Bannalikar, 2022). They identified B. abortus by IS711 PCR assay and found it to be effective. Molecular approaches for identification of Brucella species have proved to be powerful tools to confirm the disease and to establish the genetic relationship among field isolates (Allen et al., 1998). The reduced risk of laboratory-acquired infections, diagnosis within short time and accessibility are among the great advantages of these methodologies (Scholz and Vergnaud, 2013). Phylogenetically, B. abortus isolates in the current study showed similarity with isolates from Italy. Similar phylogenetic analysis findings have been reported (Barua et al., 2016; Ahmed et al., 2017; Thenamutha et al., 2017). The current study has identified that B. abortus is circulating in the cattle population in Maharashtra, India. Therefore, molecular characterization of Brucella species is becoming increasingly important to understand the epidemiological aspect (Oliveira et al., 2017). This study also provides insights on the strains of B. abortus circulating in India, which certainly help for the better understanding of the epidemiology and control of bovine brucellosis in the country.
The current study confirms that Brucella abortus is circulating in  cattle of Maharashtra, India and is likely to be causing clinical disease. This calls for the control and prevention of this disease else it will not only cause economic loss to animal husbandry but also pose threat to human health. Further studies should be conducted on Brucella species circulating in small ruminants and other domestic animals to help in the epidemiology of brucellosis. Further, there is a need to create awareness for safe disposal of aborted materials among animal owners.
The authors are thankful to the funding agency, the Indian Council of Medical Research (ICMR), for supporting this study through a funding. This study was funded by the grant from Indian Council of Medical Research (ICMR), New Delhi;  IRIS ID Zon/54/2020/ECD-II.
 
Disclaimers
 
The views and conclusions expressed in this article are solely those of the authors and do not necessarily represent the views of their affiliated institutions. The authors are responsible for the accuracy and completeness of the information provided, but do not accept any liability for any direct or indirect losses resulting from the use of this content.
 
Informed consent
 
All animal procedures for experiments were approved by the Committee of Experimental Animal care and handling techniques were approved by the University of Animal Care Committee.
The authors declare that there are no conflicts of interest regarding the publication of this article.

  1. Ahmed, R., Khushi, R.A., Muhammad, K.M., Masood Rabbani, M.R., Khan, M.S., Ali, M.A., Saira Naureen, S.N., Faria Kanwal, F.K., Sohail Raza, S.R., Aqib, A.I., Haleema Sadia, H.S. and Chang YungFu, C.Y. (2017). Phylogenetic analysis of soil borne Brucella species by targeting insertion sequence 711 element in Punjab, Pakistan. International J. Agriculture and Biology. pp: 1560-8530. 

  2. Allen, C.A., Adams, L.G. and Ficht, T.A. (1998). Transposon-derived Brucella abortus rough mutants are attenuated and exhibit reduced intracellular survival. Infection and Immunity 66(3): 1008-1016. 

  3. Awwad, E., Adwan, K., Farraj, M., Essawi, T., Rumi, I., Manasra, A., Baraitareanu, S., Gurau, M.R. and Danes, D. (2015). Cell envelope virulence genes among field strains of Brucella melitensis isolated in West Bank part of Palestine. Agriculture and Agricultural Science Procedia. 6: 281- 286.

  4. Baily, G., Drasar, B. and Stoker, N. (1992). Detection of Brucella melitensis and Brucella abortus by DNA amplification. The Journal of Tropical Medicine and Hygiene. 95(4): 271-275.

  5. Barua, A., Kumar, A., Thavaselvam, D., Mangalgi, S., Prakash, A., Tiwari, S., Arora, S. and Sathyaseelan, K. (2016). Isolation and characterization of Brucella melitensis isolated from patients suspected for human brucellosis in India. Indian J. Med Res. 143(5): 652-658. 

  6. Bricker, B.J. and Halling, S.M. (1994). Differentiation of Brucella abortus Bv. 1, 2 and 4, Brucella melitensis, Brucella ovis and Brucella suis Bv. 1 by PCR. Journal of Clinical Microbiology. 32(11): 2660-2666.

  7. Corbel, M.J., Elberg, S.S. and Cosivi, O. (2006). Brucellosis in humans and animals. World Health Organization, Geneva. 

  8. Efrem, G.H., Mihreteab, B., Ghebremariam, M.K., Getachew, Y. and Mamo, G. (2024). Isolation and identif. ication of B. abortus and B. melitensis in ruminants with a history of abortion: The first report from Eritrea. Ethiopian Veterinary Journal. 28(1): 122-138. 

  9. Elrashedy, A., Gaafar, M., Mousa, W., Nayel, M., Salama, A., Zaghawa,  A., Elsify, A. and Dawood, A.S. (2022). Immune response and recent advances in diagnosis and control of brucellosis. Ger J. Vet Res. 2: 10-24. 

  10. Franco, M.P., Mulder, M., Gilman, R.H. and Smits, H.L. (2007). Human brucellosis. The Lancet Infectious Diseases. 7(12): 775- 786. 

  11. Garcia-Yoldi, D., Marin, C.M., Miguel, M. J., Munoz, P.M., Vizmanos, J.L. and Goni, I.L. (2006). Multiplex PCR assay for the identification and differentiation of all Brucella species and the vaccine strains Brucella abortus S19 and RB51 and Brucella melitensis Rev1. Clinical Chemistry. 52(4): 779-781. 

  12. Jaismon, P.A., Sushmitha, A.P., Verma, M.R., Singh, Y.P., Borthakur, U., Kumar, S., Sharun, K. and Dhama, K. (2023). Prevalence of bovine brucellosis in India: A meta-analysis. Veterinary Quarterly. 43(1): 1-9.                      

  13. Jeyaprakash, C., Ranjitsingh, A.J.A. and Amuthan, A. (1999). Isolation of Brucella spp. from indigenous and cross- bred cows and evaluation of their antibiogram. Indian Journal of Animal Sciences. 33: 99-103.

  14. Kaur, P., Sharma, N.S. and Arora, A.K. (2018). Investigation of brucellosis in cattle and buffaloes by conventional and molecular assays. Indian Journal of Animal Research. 52(10): 1482-1487. doi: 10.18805/ijar.B-3375

  15. Koneman, E.W., Allen, S.D., Janda, W.M., Schreckenberger, P.C. and Winn, W.C. (1997). Brucella species, Diagnostic Microbiology, 5th edition, Lippincott, Philadelphia, Pa, USA, 431-436.

  16. Kumar, S., Stecher, G. and Tamura, K. (2016). MEGA7: Molecular evolutionary Genetics Analysis version 7.0 for bigger databases. Molecular Biology Evolution. 33: 1870-1874. 

  17. Mengele, I.J., Akoko, J.M., Shirima, G.M., Bwatota, S.F., Motto, S.K., Hernandez-Castro, L.E., Komwihangilo, D.M., Lyatuu, E., Bronsvoort, B.M.D.C. and Cook, E.A.J. (2024). Brucella species circulating in small holder dairy cattle in Tanzania. Pathogens. 13(9): 815. 

  18. Mittal, M., Sharma,V., Nehra,K., Chakravarti, S., Kundu, K., Bansal, V.K., Churamani, C.P. and Kumar, A. (2018). Abortions in an organized dairy farm from North India reveal the possibility of breed susceptibility to Bovine Brucellosis. One Heal. 5: 1-5.

  19. OIE (2009). Bovine Brucellosis, Manual of diagnostic tests and vaccines for terrestrial animals. World Organisation for Animal Health. 

  20. Oliveira, M.S., Dorneles, E.M.S., Soares, P.M.F., Junior, A.A.F., Orzil, L., de Souza, P.G. and Lage, A.P. (2017). Molecular epidemiology of Brucella abortus isolated from cattle in Brazil, 2009-2013. Acta Tropica. 166: 106-113. 

  21. Patel, K.B., Patel, S.I., Patel, B.K., Chauhan, H.C., Bhagat, A.G. and Chandel, B.S. (2017). Comparative study on cultural and molecular methods for detection of Brucella melitensis in sheep and goat. Ruminant Science. 6(2): 309-314.

  22. Scholz, H.C. and Vergnaud, G. (2013). Molecular characterisation of Brucella species. Rev. Sci. Tech. 32(1): 149-162. 

  23. Seleem, M.N., Boyle, S.M. and Sriranganathan, N. (2010). Brucellosis: A re-emerging zoonosis. Veterinary Microbiology. 140(3- 4): 392-398. 

  24. Shome, R., Kalleshamurthy, T., Shankaranarayana, P.B., Giribattanvar, P., Chandrashekar, N., Mohandoss, N., Shome, B.R., Kumar, A., Barbuddhe, S.B. and Rahman, H. (2017). Prevalence and risk factors of brucellosis among veterinary health care professionals. Pathog Glob Health. 111: 234-239. 

  25. Shrimali, M.D., Shah, N.M., Chandel, B.S., Chauhan, H.C., Patel, S.S., Patel, K.B., Patel, B.K., Bhagat, A.G., Patel, S.I., Dadawala, A.I. and Shah, J.D. (2017). Isolation, identification and molecular characterization of Brucella abortus from bovines. Journal of Pure and Applied Microbiology. 11(2): 933-939. 

  26. Singh, A., Gupta, V.K., Kumar, A., Singh, V.K. and Nayakwadi, S. (2013). 16S rRNA and omp31 gene based molecular characterization of field strains of B. melitensis from aborted foetus of goats in India. The Scientific World Journal. 1: 160376. 

  27. Sonekar, C.P., Kale, S., Bhoyar, S., Paliwal, N., Shinde, S.V., Awandkar, S.P., Khan, W., Chaudhari, S.P. and Kurkure, N.V. (2018). Brucellosis in migratory sheep flock from Maharashtra, India. Tropical Animal Health and Production. 50(1): 91-96.

  28. Thenamutha, M., Zakiah, M.D., Azizul, O. and Maswati, M. (2017). Isolation and molecular characterization of Brucella abortus and Brucella melitensis from samples received by the Regional Veterinary Laboratory, Bukit Tengah, Malaysia. Malaysian J. Veterinary Research. 8(1): 79-87.

  29. Thorat, V. and Bannalikar, A. K. (2022). Molecular characterization of Brucella species detected from clinical samples of cattle and buffaloes. The Indian J. of Animal Sciences. 92(11): 1274-1279. 

  30. Ullah, I., Naz, S., Khattak, U. S., Saeed, M., ul Akbar, N. and Rauf, S. (2024). Molecular prevalence, phylogenetic analysis and PCR-based detection of Brucella melitensis in humans and cattle in Southern Khyber Pakhtunkhwa, Pakistan. Comparative Immunology, Microbiology and Infectious Diseases. 115: 102262.            

Molecular Characterization and PCR-based Detection of Brucella abortus Clinical Isolates from Cattle in Maharashtra, India

M
Madhuri Hedau1,*
J
Jaya Singh1
N
Naina Singh1
M
Megha Kaore1
S
S.P. Chaudhar2
V
Varsha thorat3
N
N.V. Kurkure1
1Department of Veterinary Pathology, Nagpur Veterinary College, Nagpur-440 006, Maharashtra, India.
2Department of Veterinary Public Health, Nagpur Veterinary College, Nagpur-440 006, Maharashtra, India.
3Department of Veterinary Microbiology, Mumbai Veterinary College, Mumbai Maharashtra Animal and Fishery Sciences University, Nagpur-440 006, Maharashtra, India.

Background: Brucellosis is an important zoonotic disease in several parts of the world including India. The current study was undertaken for molecular characterization and PCR-based detection of Brucella species of cattle from Maharashtra, India.

Methods: A total of 220 clinical samples (vaginal swabs and placental tissues) were collected from cattle of various organized and unorganized farms from different regions of Maharashtra. These samples were processed for isolation of Brucella organisms and further characterized by PCR and sequencing.

Result: A total of 10 Brucella isolates were recovered from 220 samples (5.54%). BCSP 31  and 16S rRNA PCR showed an amplicon of 223 and 1412 bp in 10 isolates respectively. Species identification was performed using IS711 PCR, conventional methodology, Bruce-ladder PCR and AMOS PCR. During the study period, a total of ten isolates from vaginal swab and placental tissues of cattle were identified as Brucella abortus. The phylogenetic analysis detected the close relationship of the organism with that of isolate from Italy. Correct and timely diagnosis of brucellosis is important for control of  disease. The molecular methods used in the current study aided to speed up the diagnosis of the disease.

Brucella spp. are Gram negative facultative intracellular bacteria that are causative agents of brucellosis. Brucellosis is a major infectious disease of livestock and a re-emerging zoonotic disease in several developing countries including India (Shome et al., 2017). Brucellosis is an important cause of veterinary morbidity and mortality and responsible for economic losses in developing countries (Franco et al., 2007). Infection in cattle is mainly caused by Brucella abortus and the economic losses associated with bovine brucellosis are primarily related to various reproductive problems, perinatal mortality and chronic or diffuse interstitial mastitis (Corbel et al., 2006; OIE, 2009). Brucellosis prevalence among livestock animals varies widely across India, differing from region to region and farm to farm (Jaismon et al., 2023). Current laboratory diagnostic tests for brucellosis include the serological tests and cultural examination. However, these serological tests are not very sensitive or specific to be used for diagnosis. PCR- based assays proved to be more accurate and sensitive compared to traditional bacteriological methods used for the identification of Brucella species at the biovar level and can identify low amounts of Brucella DNA (Ullah et al., 2024). Improved laboratory diagnosis is possible due to developments in culture and serological methods and the availability of advanced molecular detection and typing methods. These molecular methods could serve as important alternatives to culture methods for the confirmation of the disease and may be a valuable epidemiological tools to trace sources of infection. Samples collected in this study were taken through various PCR assays to identify B. abortus at genus and species level. PCR-positive samples were subjected to sequencing in order to confirm the presence of B. abortus and to determine the relationships between the various stains. It can be concluded that this work is useful for expanding knowledge related to molecular characteristics of brucellosis in cattle of Maharashtra, India.
Prior to the start of collection of samples, experimental protocol was approved by the Institutional Animal Ethics Committee (IAEC) and Institutional Bio-safety Committee (IBSC) of Nagpur Veterinary College, Nagpur, India.
 
Reference strain
 
Reference strain included B. abortus S99 (VTCCBAA465) obtained from National Centre for Veterinary Type Cultures (NCVTC), Hisar, Haryana. B. abortus S99 and E. coli strain were used as positive and negative controls, respectively.
 
Collection of sample
 
The farms having history of abortion were selected for the present study. A total of 220 samples (vaginal swabs and placental tissues) were collected from cattle of various organized and unorganized farms from different regions of Maharashtra state for the detection and isolation of Brucella spp.
 
Processing of specimens by conventional and molecular methods
 
The vaginal swabs and placental tissues were processed for isolation of Brucella by conventional methods. The isolates suspected of Brucella were screened by biochemical tests for identification (OIE, 2009). The isolates recovered were further subjected to PCR. The placental tissue samples were also used for direct DNA extraction and further characterized by PCR assays. The extraction of genomic DNA of B. abortus from the bacterial cultures, Brucella reference strain and placental tissue was carried out by using the HiPurA® Multi-Sample DNA Purification Kit (HiMedia) as per the manufacturer’s protocol. The extracted DNA was quantified spectrophotometrically using nanodrop spectrophotometer (Eppendorf).
 
BCSP 31, 16S rRNA, IS711, AMOS and Bruce-ladder PCR assays
 
The BCSP 31 and 16S rRNA PCR was carried out on isolates and clinical samples to detect Brucella at genus level with primers mentioned in Table 1 (Baily et al., 1992; Singh et al., 2013). The genus was re-confirmed using conventional methodologies and protocols (OIE, 2009). Brucella species identification was performed using IS711 PCR and AMOS-PCR by using specific primers of B. abortus, B. melitensis, B. ovis and B. suis which are listed in Table 1 (Bricker and Halling, 1994; Sonekar et al., 2018). Species identification and differentiation of B. abortus was also performed using the Bruce-ladder multiplex PCR protocol using a set of eight primer pairs mentioned in Table 1 (Garcia-Yoldi et al., 2006). The BCSP31, 16S rRNA, IS711, AMOS and Bruce-ladder PCR were set in a final volume of 25 μl as mentioned in Table 2. PCR reactions were carried out in thermal cycler (Eppendorf, vapo.protect) as per cycling conditions mentioned in Table 3. The amplified BCSP31, 16S rRNA, IS711, AMOS and Bruce-ladder PCR products were visualized in ethidium bromide-stained 1.5% agarose gel under Automatic Computerized Gel Documentation and Analysis System (Gel Doc, Syngene). A molecular weight marker with 100 bp and 1kb increments (Himedia) were used as a DNA standard.

Table 1: Primer sequences used in the present study.



Table 2: PCR reaction mixture for BCSP 31, 16s rRNA, IS711, AMOS and Bruce-ladder PCR.



Table 3: Cycling conditions for BCSP 31, IS711, Bruce-ladder PCR, AMOS PCR and 16s rRNA PCR.


 
Sequence and phylogenetic analysis
 
PCR products IS711 of three Brucella isolates were submitted for sequencing to Eurofins Genomics India Pvt. Ltd, Banglore (India). The sequences were blast using blast search of NCBI for identity of sequences. Both the sequences were aligned and consensus sequence was prepared with Bioedit (www.mbio.ncsu.edu/BioEdit/bioedit.html). The alignment was carried out with Clustal W of MEGA 7.0 and the phylogenetic tree was constructed based on Brucella abortus sequences by neighbor joining method in MEGA 7.0 (Kumar et al., 2016). 
In the present study, molecular characterization of Brucella abortus clinical isolates from cattle in Maharashtra, India was carried out.
 
Laboratory findings
 
A total of 10 Brucella isolates were recovered from 220 clinical samples with 4.54% isolation rate. Seven isolates were derived from vaginal swabs and three isolates were obtained from placental tissue. All the isolates exhibited morphology and staining characteristics typical of Brucella spp., i.e. they were Gram- negative coccobacilli, acid-fast in MZN staining. The Colonies were round, glistening, smooth and mucoid on BAM (Fig 1); non-lactose fermenting on MacConkey agar and non-haemolytic on blood agar. All cultures on Brucella agar medium were typical isolates of Brucella in morphology, colonial appearance and characteristics of growth. The isolates recovered were further confirmed as members of Brucella spp. employing different biochemical tests. All isolates produced oxidase, indole, urease, H2S and reduced nitrate.

Fig 1: Brucella abortus on Brucella specific agar.


 
PCR analysis
 
All the 10 isolates and the reference strain B. abortus S99 showed BCSP31 gene-specific amplicon of 223 bp and 16S rRNA specific amplicon of 1412 bp confirming their identity as members of genus Brucella (Fig 2 and 3). In IS711 PCR, B. abortus S99 and 10 clinical isolates generated a product of 498 bp, confirming the isolates as B. abortus (Fig 4). All of the 10 Brucella isolates were identified as B. abortus using the AMOS-PCR method (Fig 5). The Bruce-ladder PCR identified all the ten isolates as B. abortus by amplifying genes crp, bp26, eryC, pda and wboA of 152 bp, 450 bp, 587 bp, 794 bp and 1682 bp respectively (Fig 6).

Fig 2: Identification of field isolates of Brucella spp. by BCSP 31 PCR.



Fig 3: Identification of field isolates of Brucella spp. by 16S rRNA PCR.



Fig 4: Identification of Brucella abortus by IS711 PCR assay.



Fig 5: Identification of B. abortus by AMOS PCR.



Fig 6: Identification of B. abortus by Bruce-ladder PCR.


 
Molecular characterization of Brucella abortus by nucleotide sequencing
 
Three isolates were subjected to sequencing of 498 bp amplicon of IS711 gene. It was observed that amplicons of the IS711 gene of the three isolates of B. abortus had 99 to 100% homology with the available sequences of B. abortus in NCBI. Results of phylogenetic analysis indicated that B. abortus isolates i.e. NGP1, NGP2 and NGP3, showed similarity with isolates from Italy (Fig 7).

Fig 7: Phylogenetic tree of Brucella isolates based on IS711 sequences.


       
Brucellosis is considered one of the world’s most serious zoonotic diseases which causes enormous economic losses in both developed and developing countries. The disease has disseminated worldwide, despite massive attempts to eradicate it in many countries (Elrashedy et al., 2022). Several workers in India have attempted isolation of Brucella spp. with varying rates of isolation. Recovery of 30% isolates from abomasal contents of aborted foetuses, 16% isolates from foetal tissues and 8.42% from vaginal swabs have been reported earlier (Thorat and Bannalikar, 2022). Isolation of B. abortus in 8.92% cases of bovine while B. abortus from vaginal swabs in 15% cases have also been reported by various workers (Jeyaprakash et al., 1999; Shrimali et al., 2017). In the present study, isolation rate was relatively low (4.54%) than the previous reports. However, isolation rate of 4.4% for bovine brucellosis appear to similar as reported by Mittal et al., (2018) might be due the slow growth and fastidious nature of the Brucella spp (Seleem et al., 2010; Patel et al., 2017). While India, prevalence of brucellosis in animals is ranging from low to moderate, however, the isolation rate of Brucella spp. from clinical samples of animals tends to be low. While many animals may test positive for antibodies to Brucella (seropositive), the actual bacteria are not frequently isolated from them which can be attributed to factors like the stage of infection, the type of sample tested etc. Isolation data and clinical pictures indicated that typically isolates were obtained from vaginal swabs of animals with a history of late pregnancy abortion (7-9 months). In the present study, only animals with a history of abortion were sampled to increase the probability of detecting Brucella-infected animals. The presence of Brucella in vaginal swabs of cattle has been recorded in other studies (Thorat and Bannalikar, 2022; Efrem et al., 2024). Hence, the presence of Brucella in the vagina signifies that the Veterinarians and farmers managing difficult calvings and retained placenta cases in cows should use personal protective equipment (Mengele et al., 2024). Furthermore, a large number of animals (n=210) with a recent history of abortion were negative on cultural examination. In these cases, other factors and infectious agents can induce abortion at different stages of the gestation period and abortion was not necessarily caused by Brucella infection (Efrem et al., 2024). All the 10 isolates obtained in the present investigation were initially confirmed by the cultural, morphological and biochemical tests as Brucella species (Koneman et al., 1997). The BCSP31 and 16S rRNA PCR assay detected all the isolates as Brucella at genus level. Similar efficacy of the BCSP31 primers in detecting Brucella organism at the genus level was previously recorded (Kaur et al., 2018; Thorat and Bannalikar, 2022). In the present study, 16S rRNA gene amplification was used as a rapid confirmatory identification tool for Brucella genus (Singh et al., 2013). The results of IS711 assay recorded in the present investigation agree with the findings of earlier researchers (Awwad et al., 2015; Thorat and Bannalikar, 2022). They identified B. abortus by IS711 PCR assay and found it to be effective. Molecular approaches for identification of Brucella species have proved to be powerful tools to confirm the disease and to establish the genetic relationship among field isolates (Allen et al., 1998). The reduced risk of laboratory-acquired infections, diagnosis within short time and accessibility are among the great advantages of these methodologies (Scholz and Vergnaud, 2013). Phylogenetically, B. abortus isolates in the current study showed similarity with isolates from Italy. Similar phylogenetic analysis findings have been reported (Barua et al., 2016; Ahmed et al., 2017; Thenamutha et al., 2017). The current study has identified that B. abortus is circulating in the cattle population in Maharashtra, India. Therefore, molecular characterization of Brucella species is becoming increasingly important to understand the epidemiological aspect (Oliveira et al., 2017). This study also provides insights on the strains of B. abortus circulating in India, which certainly help for the better understanding of the epidemiology and control of bovine brucellosis in the country.
The current study confirms that Brucella abortus is circulating in  cattle of Maharashtra, India and is likely to be causing clinical disease. This calls for the control and prevention of this disease else it will not only cause economic loss to animal husbandry but also pose threat to human health. Further studies should be conducted on Brucella species circulating in small ruminants and other domestic animals to help in the epidemiology of brucellosis. Further, there is a need to create awareness for safe disposal of aborted materials among animal owners.
The authors are thankful to the funding agency, the Indian Council of Medical Research (ICMR), for supporting this study through a funding. This study was funded by the grant from Indian Council of Medical Research (ICMR), New Delhi;  IRIS ID Zon/54/2020/ECD-II.
 
Disclaimers
 
The views and conclusions expressed in this article are solely those of the authors and do not necessarily represent the views of their affiliated institutions. The authors are responsible for the accuracy and completeness of the information provided, but do not accept any liability for any direct or indirect losses resulting from the use of this content.
 
Informed consent
 
All animal procedures for experiments were approved by the Committee of Experimental Animal care and handling techniques were approved by the University of Animal Care Committee.
The authors declare that there are no conflicts of interest regarding the publication of this article.

  1. Ahmed, R., Khushi, R.A., Muhammad, K.M., Masood Rabbani, M.R., Khan, M.S., Ali, M.A., Saira Naureen, S.N., Faria Kanwal, F.K., Sohail Raza, S.R., Aqib, A.I., Haleema Sadia, H.S. and Chang YungFu, C.Y. (2017). Phylogenetic analysis of soil borne Brucella species by targeting insertion sequence 711 element in Punjab, Pakistan. International J. Agriculture and Biology. pp: 1560-8530. 

  2. Allen, C.A., Adams, L.G. and Ficht, T.A. (1998). Transposon-derived Brucella abortus rough mutants are attenuated and exhibit reduced intracellular survival. Infection and Immunity 66(3): 1008-1016. 

  3. Awwad, E., Adwan, K., Farraj, M., Essawi, T., Rumi, I., Manasra, A., Baraitareanu, S., Gurau, M.R. and Danes, D. (2015). Cell envelope virulence genes among field strains of Brucella melitensis isolated in West Bank part of Palestine. Agriculture and Agricultural Science Procedia. 6: 281- 286.

  4. Baily, G., Drasar, B. and Stoker, N. (1992). Detection of Brucella melitensis and Brucella abortus by DNA amplification. The Journal of Tropical Medicine and Hygiene. 95(4): 271-275.

  5. Barua, A., Kumar, A., Thavaselvam, D., Mangalgi, S., Prakash, A., Tiwari, S., Arora, S. and Sathyaseelan, K. (2016). Isolation and characterization of Brucella melitensis isolated from patients suspected for human brucellosis in India. Indian J. Med Res. 143(5): 652-658. 

  6. Bricker, B.J. and Halling, S.M. (1994). Differentiation of Brucella abortus Bv. 1, 2 and 4, Brucella melitensis, Brucella ovis and Brucella suis Bv. 1 by PCR. Journal of Clinical Microbiology. 32(11): 2660-2666.

  7. Corbel, M.J., Elberg, S.S. and Cosivi, O. (2006). Brucellosis in humans and animals. World Health Organization, Geneva. 

  8. Efrem, G.H., Mihreteab, B., Ghebremariam, M.K., Getachew, Y. and Mamo, G. (2024). Isolation and identif. ication of B. abortus and B. melitensis in ruminants with a history of abortion: The first report from Eritrea. Ethiopian Veterinary Journal. 28(1): 122-138. 

  9. Elrashedy, A., Gaafar, M., Mousa, W., Nayel, M., Salama, A., Zaghawa,  A., Elsify, A. and Dawood, A.S. (2022). Immune response and recent advances in diagnosis and control of brucellosis. Ger J. Vet Res. 2: 10-24. 

  10. Franco, M.P., Mulder, M., Gilman, R.H. and Smits, H.L. (2007). Human brucellosis. The Lancet Infectious Diseases. 7(12): 775- 786. 

  11. Garcia-Yoldi, D., Marin, C.M., Miguel, M. J., Munoz, P.M., Vizmanos, J.L. and Goni, I.L. (2006). Multiplex PCR assay for the identification and differentiation of all Brucella species and the vaccine strains Brucella abortus S19 and RB51 and Brucella melitensis Rev1. Clinical Chemistry. 52(4): 779-781. 

  12. Jaismon, P.A., Sushmitha, A.P., Verma, M.R., Singh, Y.P., Borthakur, U., Kumar, S., Sharun, K. and Dhama, K. (2023). Prevalence of bovine brucellosis in India: A meta-analysis. Veterinary Quarterly. 43(1): 1-9.                      

  13. Jeyaprakash, C., Ranjitsingh, A.J.A. and Amuthan, A. (1999). Isolation of Brucella spp. from indigenous and cross- bred cows and evaluation of their antibiogram. Indian Journal of Animal Sciences. 33: 99-103.

  14. Kaur, P., Sharma, N.S. and Arora, A.K. (2018). Investigation of brucellosis in cattle and buffaloes by conventional and molecular assays. Indian Journal of Animal Research. 52(10): 1482-1487. doi: 10.18805/ijar.B-3375

  15. Koneman, E.W., Allen, S.D., Janda, W.M., Schreckenberger, P.C. and Winn, W.C. (1997). Brucella species, Diagnostic Microbiology, 5th edition, Lippincott, Philadelphia, Pa, USA, 431-436.

  16. Kumar, S., Stecher, G. and Tamura, K. (2016). MEGA7: Molecular evolutionary Genetics Analysis version 7.0 for bigger databases. Molecular Biology Evolution. 33: 1870-1874. 

  17. Mengele, I.J., Akoko, J.M., Shirima, G.M., Bwatota, S.F., Motto, S.K., Hernandez-Castro, L.E., Komwihangilo, D.M., Lyatuu, E., Bronsvoort, B.M.D.C. and Cook, E.A.J. (2024). Brucella species circulating in small holder dairy cattle in Tanzania. Pathogens. 13(9): 815. 

  18. Mittal, M., Sharma,V., Nehra,K., Chakravarti, S., Kundu, K., Bansal, V.K., Churamani, C.P. and Kumar, A. (2018). Abortions in an organized dairy farm from North India reveal the possibility of breed susceptibility to Bovine Brucellosis. One Heal. 5: 1-5.

  19. OIE (2009). Bovine Brucellosis, Manual of diagnostic tests and vaccines for terrestrial animals. World Organisation for Animal Health. 

  20. Oliveira, M.S., Dorneles, E.M.S., Soares, P.M.F., Junior, A.A.F., Orzil, L., de Souza, P.G. and Lage, A.P. (2017). Molecular epidemiology of Brucella abortus isolated from cattle in Brazil, 2009-2013. Acta Tropica. 166: 106-113. 

  21. Patel, K.B., Patel, S.I., Patel, B.K., Chauhan, H.C., Bhagat, A.G. and Chandel, B.S. (2017). Comparative study on cultural and molecular methods for detection of Brucella melitensis in sheep and goat. Ruminant Science. 6(2): 309-314.

  22. Scholz, H.C. and Vergnaud, G. (2013). Molecular characterisation of Brucella species. Rev. Sci. Tech. 32(1): 149-162. 

  23. Seleem, M.N., Boyle, S.M. and Sriranganathan, N. (2010). Brucellosis: A re-emerging zoonosis. Veterinary Microbiology. 140(3- 4): 392-398. 

  24. Shome, R., Kalleshamurthy, T., Shankaranarayana, P.B., Giribattanvar, P., Chandrashekar, N., Mohandoss, N., Shome, B.R., Kumar, A., Barbuddhe, S.B. and Rahman, H. (2017). Prevalence and risk factors of brucellosis among veterinary health care professionals. Pathog Glob Health. 111: 234-239. 

  25. Shrimali, M.D., Shah, N.M., Chandel, B.S., Chauhan, H.C., Patel, S.S., Patel, K.B., Patel, B.K., Bhagat, A.G., Patel, S.I., Dadawala, A.I. and Shah, J.D. (2017). Isolation, identification and molecular characterization of Brucella abortus from bovines. Journal of Pure and Applied Microbiology. 11(2): 933-939. 

  26. Singh, A., Gupta, V.K., Kumar, A., Singh, V.K. and Nayakwadi, S. (2013). 16S rRNA and omp31 gene based molecular characterization of field strains of B. melitensis from aborted foetus of goats in India. The Scientific World Journal. 1: 160376. 

  27. Sonekar, C.P., Kale, S., Bhoyar, S., Paliwal, N., Shinde, S.V., Awandkar, S.P., Khan, W., Chaudhari, S.P. and Kurkure, N.V. (2018). Brucellosis in migratory sheep flock from Maharashtra, India. Tropical Animal Health and Production. 50(1): 91-96.

  28. Thenamutha, M., Zakiah, M.D., Azizul, O. and Maswati, M. (2017). Isolation and molecular characterization of Brucella abortus and Brucella melitensis from samples received by the Regional Veterinary Laboratory, Bukit Tengah, Malaysia. Malaysian J. Veterinary Research. 8(1): 79-87.

  29. Thorat, V. and Bannalikar, A. K. (2022). Molecular characterization of Brucella species detected from clinical samples of cattle and buffaloes. The Indian J. of Animal Sciences. 92(11): 1274-1279. 

  30. Ullah, I., Naz, S., Khattak, U. S., Saeed, M., ul Akbar, N. and Rauf, S. (2024). Molecular prevalence, phylogenetic analysis and PCR-based detection of Brucella melitensis in humans and cattle in Southern Khyber Pakhtunkhwa, Pakistan. Comparative Immunology, Microbiology and Infectious Diseases. 115: 102262.            
In this Article
Published In
Indian Journal of Animal Research

Editorial Board

View all (0)