Pest investation
The
S. exigua pests found in this study were all in the larval stage (Fig 2). Based on Fig 1, during cultivation, it was found that the use of insect nets could inhibit caterpillar infestation. This proves that insect netting covers can inhibit or reduce pest infestation.
(Johnson et al., 2020; Wang et al., 2025). The use of insect net installed on each shallot bed acts as a physical barrier to insect pests. The insect nets are installed to form a tunnel that envelops the beds, thereby limiting the population of insect pests outside the insect nets, such as limiting the number of
S. exigua imagoes that will lay eggs on shallot plants. The population of
S. exigua is also influenced by environmental factors, such as air temperature, air humidity and light intensity
(Maharjan et al., 2022; Zhang et al., 2025). The air temperature in the insect net, namely the insect net and the insect net + PGPR, was lower than the air temperature in the treatment without insect nets, namely the control and the PGPR. Meanwhile, the population of
S. exigua caterpillars was found to be high in the treatments without insect netting, namely the control treatment and the PGPR treatment. Optimal conditions for development range from 25-30°C, at which egg hatching and larval survival are maximized; an increase in temperature will reduce these rates
(Dash et al., 2024). The use of insect netting lowers the microclimate temperature around the plants, creating conditions that are physiologically less favorable for the development and reproduction of pests (
Böckmann, 2022). At the same time, the insect net functions as a physical barrier that limits insect access to plants. Air humidity in the insect net, namely the insect net treatment and the insect net + PGPR treatment, was higher than the air temperature in the treatment without an insect net, namely the control treatment and the PGPR treatment. Meanwhile, the population of
S. exigua caterpillars was found in the treatments without insect netting, namely the control treatment and the PGPR treatment.
S. exigua can generally live at a humidity of 70-75%, where the temperature is not too high. In the use of insect nets with high humidity,
S. exigua was not found. The use of insect nets plays a greater role as a barrier than as a modification of the microclimate in controlling
S. exigua pest attacks
(Jaba et al., 2020).
The highest damage intensity was found in the control treatment, with an average of 9%, while the lowest damage intensity was found in the insect net treatment and the insect net + PGPR treatment, which was 0%. Meanwhile, in the PGPR treatment, the average damage intensity was 8% (Fig 1). The use of insect net gauze can inhibit the egg-laying of
S. exigua adult, so that no eggs or larvae were found in this treatment and therefore no damage intensity was recorded. These results are in line with the results of research on shallots by
Pangestu et al. (2021) which shows that the average intensity of damage caused by
S. exigua between the control treatment and the cover treatment shows a significant difference. Damage caused by
S. exigua on shallots is characterized by transparent spots on the leaves due to the consumption of the inner leaf tissue, while the outer epidermal layer is left intact (Fig 2). The extent of plant damage caused by pests can be influenced by the population of the pest. The higher the population of plant pests, the greater the damage they cause. (
Bakry and Abdel-Baky, 2023).
Incidence of disease
Based on observations, two diseases were found to occur: trotol (wilt) disease, caused by the fungus
Alternaria porri and moler (blight) disease, caused by the fungus
Fusarium oxysporum. The appearance of trotol (wilt) disease was characterized by the presence of white or gray curved spots on the leaves and wilted leaves (Fig 3). In addition, the affected leaves will bend. According to
Kim et al., (2022), symptoms caused by the
Alternaria porri fungus species appear as sunken lesions that are often elliptical in shape with yellow to pale brown borders. As the disease progresses, the lesions enlarge and produce purplish-brown necrotic lesions on the leaves, which eventually wilt, delaying bulb formation and maturation
(Dar et al., 2020). Meanwhile, moler (blight) disease is characterized by twisted or curved leaves, yellowing leaves and wilting plants (Fig 3). These symptoms were consistent with those described above
Elvira et al. (2023). These were symptoms visible on plant leaves, including longer pseudostem growth, so that the leaves do not grow upright but grow twisted or curled. This disease, was caused by infection with the fungus
F. oxysporum, will eventually cause the plant to be uprooted due to disruption of root growth. This disruption also affects water or nutrient absorption and ultimately causes plant death (
Punja, 2021).
The most prevalent disease incident was trotol disease. The incidence of trotol (wilt) disease was more than 50% in all treatments. Meanwhile, the incidence of moler (blight) disease occurred in the control and PGPR treatments. The incidence of moler (blight) disease in the control treatment was 3.34% and in the PGPR treatment was 1.34% (Fig 4). The high incidence of trotol (wilt) disease in all treatments, including those using insect net, indicates that the
F. oxysporum pathogen is able to adapt to high humidity conditions under insect net. Increased air humidity actually supports spore germination and infection on leaves, especially if there is persistent dew or leaf moisture
(Attri et al., 2024) . However, it provides indirect benefits by stabilizing the microenvironment, making plants healthier and potentially more resilient even when infected with wilt. The presence of PGPR also plays a role in increasing the systemic resistance of plants (
Mazuecos-Aguilera et al., 2025;
Zhu et al., 2022), Although its effect on trotol (wilt) is not as strong as its effect on moler (blight), because trotol (wilt) is highly dependent on air humidity conditions that remain high regardless of any treatment.
The use of a insect net significantly reduced the ambient temperature compared to conditions without a insect net (Fig 5). This reduction in temperature may play a role in suppressing the development of
F. oxysporum, the pathogen that causes moler (blight), which develops optimally at temperatures of 28-32°C
(Sharma et al., 2024). Although the temperature under the insect net is still within that range, more stable and less extreme temperature fluctuations reduce thermal stress on plants, thereby increasing their natural resistance. On the other hand, higher humidity under the insect net does not exacerbate moler (blight), because
Fusarium is primarily influenced by soil moisture and drainage, not just air humidity. The insect net also prevents excessive direct rainfall and minimizes soil splashes containing pathogenic inoculum onto plant parts, thereby reducing the risk of infection through the roots (
Bahri, 2024).
Number of leaves
Leaves play a major role in plant growth because they cause differences in plant biomass production due to differences in the ability of leaves to photosynthesize
(Yue et al., 2019). Based on Fig 6, the use of PGPR can increase the number of shallot leaves compared to other treatments, even when infected with wilt and blight. The microclimate conditions for PGPR use are similar to those for the control, but PGPR plays a role in inducing systemic resistance, fertilizer supplier and produce hormones such as auxin and cytokinin
(Dutta et al., 2022). Through the production of growth hormones such as auxin, PGPR affects cell proliferation and new tissue formation, which can produce more leaves. In addition, without shade, plants receive full light intensity that supports maximum photosynthesis rates, producing abundant assimilates for vegetative growth even though some are diverted for resistance responses. Meanwhile, the treatment using insect net resulted in a lower number of leaves compared to the PGPR treatment. Although the insect net treatment prevented plant infection, the reduction in light intensity due to the physical barrier of the insect net became the main limiting factor for photosynthesis
(Formisano et al., 2020). The availability of assimilates for leaf formation also decreased. Stable high humidity also reduced the rate of plant transpiration, resulting in less efficient nutrient transport from the roots to the canopy. In the combination treatment of insect nets and PGPR, although PGPR continues to play a role in providing nutrients and hormones, its benefits cannot be optimally manifested because limited light and overly stable environmental conditions actually reduce the physiological drive of plants to grow vigorously
(Li et al., 2024).
Shallot yield
Based on Table 1, the results show that the average number of tubers and wet weight of tubers for each treatment differed. These results are related to the number of shallot leaves; the use of PGPR produced more leaves, resulting in more bulbs. Maximum bulb yield was observed in the treatment PGR 0.6% through foliar application
(Kale et al., 2021). Additionally, PGPR produces growth hormones such as auxin and gibberellin, which stimulate cell division and the development of storage organs (bulbs)
(Shaikh et al., 2022). Although plants in this treatment were exposed to high temperatures and the risk of disease infection, the root system strengthened by PGPR enabled the plants to optimize water and nutrient absorption, allowing more energy to be allocated to tuber formation. In addition, full light intensity without shade support maximized photosynthesis, producing abundant assimilates to be transported to the tubers. The use of insect net resulted in lower tuber yields compared to the use of PGPR due to light as a limiting factor
(Singh et al., 2023). Reduced light decreases the rate of photosynthesis, thereby limiting the availability of assimilates for tuber filling. PGPR in this combination continues to contribute to nutrient supply, but its benefits are not fully manifested due to the limited energy from photosynthesis
(Khoso et al., 2024; Su et al., 2024). The control treatment recorded the lowest results because the plants faced multiple stresses: high temperatures, low humidity, disease risk and no improvement in soil conditions through PGPR. The plants allocated more energy to survival than to tuber production, resulting in minimal tuber yield and weight
(Chen et al., 2025).