Indian Journal of Animal Research

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Research Article

Indian Journal of Animal Research, volume 53 issue 9 (september 2019) : 1156-1161

De novo transcriptome analysis of differentially expressed genes in the liver of pampus argenteus under temperature stress

Zhaohong Shi, Lei Liu, Quanxin Gao, Shiming Peng, Yanfeng Yue
1<div style="text-align: justify;">Key Laboratory of Marine and Estuarine Fisheries, Ministry of Agriculture, East China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, 200 090, Shanghai, China.</div>
Cite article:- Shi Zhaohong, Liu Lei, Gao Quanxin, Peng Shiming, Yue Yanfeng (2018). De novo transcriptome analysis of differentially expressed genes in the liver of pampus argenteus under temperature stress. Indian Journal of Animal Research. 53(9): 1156-1161. doi: 10.18805/ijar.B-941.

ABSTRACT

Pampus argenteus is an aquatic cold-blooded animal, and its growth and survival are greatly affected by ambient temperature. During aquaculture, a sudden change in water temperature may be caused by climate change or other human factors, resulting in acute temperature stress. In this study, de novo transcriptome sequencing technology was used to analyze changes in the gene expressions in the liver of P. argenteus under temperature stress to understand the mechanisms of temperature regulation in P. argenteus. The results showed that 72447398, 69534310, 63698204, 78876728 and 53969050 clean reads were obtained from four cDNA libraries (A: 27°C (control group), B: 22°C and 6 h, C: 32°C and 6 h, D: 22°C and 12 h, E: 32°C and 12 h) of the P. argenteus by Illumina sequencing technology. In A\B, A\C, A\D and A\E pairwise comparison, 353, 431, 1303 and 343 differentially expressed genes (DEGs) were detected, respectively. Of these genes, 67 genes were identified among all the pairwise comparisons as the common DEGs. Four genes related to metabolic adaption to temperature were randomly selected to validate the DEGs results by real time PCR. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis indicated some vital genes and pathways associated with metabolism in response to temperature challenge. These results will help us to understand the molecular mechanism underlying temperature regulation in P. argenteus and provide a theoretical basis for the study of related molecular mechanisms in fish under temperature stress.

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