Submitted05-10-2020|
Accepted09-03-2021|
First Online 22-04-2021|
ABSTRACT
Methods: The effect of deltamethrin on bone marrow-derived stem cells at different concentrations and time periods was analysed. To further understand the molecular basis of how these chemicals affect the protein-ligand binding, molecular docking studies were conducted.
Result: Our results on iGEMDOCK 2.1 software used to dock CD45 receptors with DLM and the binding mode indicated that the bound ligand and the active site of CD45 had a good binding score of -68.04 and formed the five H bonds with the amino acids residues of CD45. It is found from the current study that there is an increase in cytotoxicity with increased exposure to deltamethrin. Further studies can be done to note the precise target of such agents to quickly underst and and control the effect of such drugs on a safer lifestyle.
INTRODUCTION
Therefore, the present study is taken up with the objective to study the pathways leading to DLM-induced blood Stem Cell apoptosis by docking studies” and thus to predict the binding affinity of DLM towards cell receptor CD45 and also to study the pathways leading to DLM-induced blood Stem Cell apoptosis. To do this, docking studies were carried out. DLM has been targeted to the CD45 receptor using iGEMDOCK 2.1 software.
MATERIALS AND METHODS
The research work has been carried out as per the approval of the Institutional ethical committee for stem cell research and therapy N0.05/ICSCRT/2017 MVC, Chennai-7
Molecular Docking tools Employed
The CD45 structures were downloaded from the Protein Data Bank server PDB:http://www.rcsb.org/pdb). The generated structures for CD45 was 5fmv which was the structure for human. Easy modeller and Python were used to modify the structure for Capra aegagrus hircus. The protein sequence for this was downloaded from NCBI. The DLM structure was constructed using ACDChemSketch12.01 software. iGEMDOCK 2.1 software was used for docking. It detected the cavities in the CD45 structure. Deltamethrin and reference ligand structures were added to the software along with the CD45 structure. The software calculated the DOC score, number of H bonds, bond length, and amino acid residue. This was visuvalized using PyMol 2.3 software. (Table 1 and Fig 1).
@table2
Isolation, enrichment of cd45+ progenitor cells and culture with mesenchymal cells
Bone marrow collection and processing from apparently healthy goats slaughtered for food purpose were collected and processed for isolation of progenitor cells as per manufactures instruction of Easy Sep™(Stem Cell Technologies) with minor modifications to suit our needs. Isolated enriched cells were cultured in T25 culture flask at cell concentration of 1x106cells/ml in maintenance medium. The culture flasks were allowed to incubate at 37at 5% CO2 level without any disturbance for 1-2 days. Then the suspension cells were transferred in to 6 well plate with fresh growth medium containing a monolayer of bone marrow mesenchymal cells (Gowri et al., 2013) to simulate bone marrow matrix in vitro.
The cultures were allowed to grow for 7-14 days with change of medium at two days intervals. The confluent monolayer cells were subcultured, and third passage cells were used for proliferation analysis for a period of 24, 72,120, and 168 hrs. The cells are also treated with different concentrations of Deltamethrin (1.25% solution, type Veterinary raw material). Commercially available form of the drug was obtained and different concentration were prepared with DMSO as a solvent (10 mM stock) and the proliferative ability was measured as the number of viable cells over a period of 7 days. Concentrations such as 0.2mM, 0.3mM, 0.5mM, and 1mM were used to test the system along with the control and specifically, the number of viable cells was taken into consideration. To confirm that there is a reduction in overall cell survival, performed MTT and cell count assay.
Cell count Assay
The cells were cultured in a 6-well plate with a growth medium. After 24 hrs of seeding, an equal volume of cells(5µL) and tryphan blue dye(5µL) were mixed well and used for viable cell count at 24,72, 120, and 168 hrs were plotted for proliferation analysis.
Dye-based proliferation assay
The cells were cultured in a 96-well plate at a density of 1x106 cells/mL.20µL of MTT (5mg/ ml) solution was added to each well and incubated for four hours. To each well, 200 µL of DMSO working solution was added, and the OD of the reaction product was evaluated in an ELISA reader at a 570-nm wavelength. At least three independent experiments from different sample were performed to examine proliferation.
RESULTS AND DISCUSSION
Fig 1: Effect of DLM on co culturedHSC and MSC bone marrow cells. a) Representative image ofcell without drud treatment (scale bar inum) b) Data metherin effect on cacultured goat BMSc Day 3 showing change in morphology rounding of spindle cells (scale bar) c) Aggrecation of cells leading to clumping day 5 d) Apoptotic changes shows in cells day 7
There was also a significant difference in the proliferative ability between the cells grown at different time points. There was a decrease in the number of viable cells with increasing time of exposure to deltamethrin. This signifies that the longer the time of exposure, the more toxic the compound is to the system, this is more prominent at higher concentrations of the pesticide. While at the lower concentration of 0.2mM concentration, there is an increase of cell death (toxicity) by 8% from day 1 to day 7, at a higher concentration of 1mM, there is an increase of cell death (toxicity) by 19% from day 1 to day 7. Kumar et al (2014) study indicated that the cells go through apoptosis because deltamethrin occupies and binds on the binding domains of the immune receptors present on the surface of these cells, causing the normal immune pathways to become dysfunctional. Therefore the cells undergo apoptosis. Hossain and Richardson (2011), pyrethroid pesticide deltamethrin has been demonstrated the ability of pyrethroid pesticide deltamethrin to cause apoptosis both in vitro and in vivo. However, the molecular pathways leading to deltamethrin-induced apoptosis has not been established. To identify these pathways, SK-N-AS neuroblastoma cells were exposed to deltamethrin (100 nM-5 µM) for 24-48 hrs. Deltamethrin produced a time and dose-dependent increase (21-121%) in DNA fragmentation, an indicator of apoptosis. Data demonstrated that the initiation of DNA fragmentation resulted from interaction of deltamethrin with Na+ channels and consequent calcium influx, as tetrodotoxin and the intracellular Ca2+ chelator BAPTA. The present study results correlated to the apoptosis effect and analysed the less explored predicted effects of deltamethrin on blood stem cells through CD45 receptor and virtual effects on cultured cells. iGEMDOCK 2.1 software was used to dock CD45 receptors with DLM. The binding mode indicates that the bound ligand and the active site of CD45 had a good binding score of -68.04 and formed the five H bonds with the amino acids residues (HIS 418, ASN 419, ASP 436, LYS 437, ASN 438) of CD45 (Fig 2). Whereas, DLM showed a docking score of 78.78 and formed hydrogen bond with ASN 419, ASP 436 amino acid residues of CD45 (Table 1). Deltamethrin has a higher docking score as compared to the reference ligand, this might mean that deltamethrin might take the place of a molecule or a ligand that normally binds to CD45 towards immune pathway. NAG (N-acetyl glucosamine) enhances N-glycan branching promotes CTLA-4 surface expression and inhibits adoptive transfer EAE (Grigorian et al., 2007). In this pathway NAG interacts with T cell receptor (TCR) and CD45 Grigorian, et al., (2011). This might affect the overall immune response of the cell.
CONCLUSION
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