Indian Journal of Animal Research

  • Chief EditorK.M.L. Pathak

  • Print ISSN 0367-6722

  • Online ISSN 0976-0555

  • NAAS Rating 6.50

  • SJR 0.263

  • Impact Factor 0.4 (2024)

Frequency :
Monthly (January, February, March, April, May, June, July, August, September, October, November and December)
Indexing Services :
Science Citation Index Expanded, BIOSIS Preview, ISI Citation Index, Biological Abstracts, Scopus, AGRICOLA, Google Scholar, CrossRef, CAB Abstracting Journals, Chemical Abstracts, Indian Science Abstracts, EBSCO Indexing Services, Index Copernicus
Indian Journal of Animal Research, volume 52 issue 2 (february 2018) : 281-285

Molecular epidemiologic investigation of foot-and-mouth disease in pig population of India

M. Rout, S. Subramaniam, J.K. Mohapatra, B. Pattnaik
1<p style="text-align: justify;">ICAR-Project Directorate on Foot and Mouth Disease,&nbsp;IVRI Campus, Mukteswar - 263138, Nainital, Uttarakhand, India</p>
Cite article:- Rout M., Subramaniam S., Mohapatra J.K., Pattnaik B. (2017). Molecular epidemiologic investigation of foot-and-mouth disease in pig population of India . Indian Journal of Animal Research. 52(2): 281-285. doi: 10.18805/ijar.v0iOF.7809.

Foot-and-mouth disease (FMD) is a highly contagious and globally significant viral disease principally of cloven-hoofed livestock species. The present study describes the results of molecular epidemiologic investigation of FMD in pigs across various states of India between 2008 and 2014. During this period, a total of 37 clinical epithelial samples (vesicle/foot/snout epithelium) of FMD-suspected pigs were tested in a serotype differentiating antigen detection ELISA and samples found negative were further subjected to multiplex reverse transcription-polymerase chain reaction (mRT-PCR). A total of 29 (78.37%) samples were found positive for serotype O in antigen detection ELISA and 8 ELISA-negative samples were subsequently found positive for serotype O in mRT-PCR. The VP1 region-based phylogenetic analysis demonstrated the involvement of O/ME-SA/Ind2001 lineage in the outbreaks. The pig isolates clustered with the contemporary virus isolates collected from bovine indicating a close genetic relationship and therefore signifying inter-species transmission during the outbreaks. 


  1. Alexandersen, S. and Donaldson, A.I. (2002). Further studies to quantify the dose of natural aerosols of foot-and-mouth disease virus for pigs. Epidemiol. Infect., 128: 313-323.

  2. Annual Reports PDFMD. (2008-2014). Project Directorate on Foot and Mouth Disease, Mukteswar, Nainital, India.

  3. Arora, B.M. and Das, S.C. (1981). Foot and mouth disease (F.M.D.) in pigs. Indian Vet. J., 58: 170.

  4. Ayelet, G., Mahapatra, M., Gelaye, E., Egziabher, B.G., Rufeal, T., Sahle, M., Ferris, N.P., Wadsworth, J., Hutchings, G.H. and Knowles, N.J. (2009). Genetic characterization of foot-and-mouth disease viruses, Ethiopia, 1981-2007. Emerg. Infect. Dis., 15: 1409-1417. 

  5. Bachrach, H.L. (1968). Foot-and-mouth disease. Annu. Rev. Microbiol., 22: 201-244.

  6. Bhattacharya, A., Majumder, P. and Dutta, M.K. (2001). Outbreak of foot and mouth disease in an organized pig farm in Tripura state by type-O virus. Indian J. Comp. Microbiol. Immunol. Infect. Dis., 22: 140-141.

  7. Bhattacharya, S., Pattnaik, B. and Venkataramanan, R. (1996). Development and application of sandwich enzyme-linked immunosorbent assay (ELISA) for type identification of foot-and-mouth disease (FMD) virus in direct field materials. Indian J. Anim. Sci., 66: 1-9.

  8. Cottam, E.M. (2007). Micro-evolution of foot-and-mouth disease virus. University of Glasgow, Glasgow. Department of Environmental and Evolutionary Biology. Glasgow, University of Glasgow. PhD p. 209. 

  9. Donaldson, A.I. (1979). Airborne foot-and-mouth disease. Vet. Bull., 49: 653-659.

  10. Du, J., Chang, H., Cong, G., Shao, J., Lin, T., Shang, Y., Liu, Z., Liu, X., Cai, X. and Xie, Q. (2007). Complete nucleotide sequence of a Chinese serotype Asia1 vaccine strain of foot-and-mouth disease virus. Virus Genes., 35: 635-642. 

  11. Giridharan, P., Hemadri., D., Tosh., C., Sanyal, A. and Bandyopadhyay, S.K. (2005). Development and evaluation of a multiplex PCR for differentiation of foot-and-mouth disease virus strains native to India. J. Virol. Methods., 126: 1-11.

  12. Hayama, Y., Kimura, Y., Yamamoto, T., Kobayashi, S. and Tsutsui, T. (2015). Potential risk associated with animal culling and disposal during the foot-and-mouth disease epidemic in Japan in 2010. Res. Vet. Sci., 102: 228-230.

  13. Hayama, Y., Yamamoto, T., Kobayashi, S., Muroga, N. and Tsutsui, T. (2016). Potential impact of species and livestock density on the epidemic size and effectiveness of control measures for foot-and-mouth disease in Japan. J. Vet. Med. Sci., 78: 13-22.

  14. Hemadri, D., Tosh, C. Sanyal, A. and Venkataramanan, R. (2002). Emergences of a new strain of type O foot-and-mouth disease virus: its phylogenetic and evolutionary relationship with PanAsia pandemic strain. Virus Genes., 25: 23-34.

  15. Huang, C.C., Jong, M.H. and Lin, S.Y. (2000). Characteristics of foot and mouth disease virus in Taiwan. J. Vet. Med. Sci., 62: 677-679.

  16. James, A. and Rushton, J. (2002). The economics of foot-and-mouth disease. Rev. Sci. Tech. Off. Int. Epiz., 21: 637-644.

  17. Knowles, N.J. and A.R. Samuel. (1995). Polymerase chain reaction amplification and cycle sequencing of the 1D (VP1) gene of foot-    and-mouth disease viruses. Report of the Session of the Research Group of the Standing Technical Committee of European Community for Control of FMD (FAO), Vienna Austria September 1994, 45-53.

  18. Knowles, N.J., Wadsworth, J., Reid, S.M., Swabey, K.G., El-Kholy, A.A., El-Rahman, A.O.A., Soliman, H.M., Ebert, K., Ferris, N.P., Hutchings, G.H., Statham, R.J., King, D.P. and Paton, D.J. (2007). Foot-and-mouth-disease virus serotypes A in Egypt. Emerg. Infect. Dis., 13: 1593-1596.

  19. Malirat, V., de Barros, J.J.F., Bergmann, I.E., Campos, R.M., Neitzert, E., Eliane, V.C., Da Silva, E.E., Falczuk, A.J., Pinheiro, D.S.B., Natalia, V., Jose, L.Q.C., Eduardo, M. and Rosa, D.L. (2007). Phylogenetic analysis of foot-and-mouth disease virus type O reemerging in free areas of South America. Virus Res., 124: 22-28. 

  20. Muthukumar, K.P., Diwakar, R.P. Ram Sajan, Diwakar, R.K. Choudhory, G.K. and Yadav, R.K.S. (2008). FMD: a major problem in livestock economy. North-East-Veterinarian, 8: 20.

  21. Saravanan, S., Selvaraju, G. Dinakaran, A.M., Balakrishnan, S. and Geetha, M. (2009). Foot and mouth disease in an endemic area - a report. North-East-Veterinarian, 8: 24-25.

  22. Schembri, N., Hernandez-Jover, M., Toribio, J.A. and Holyoake, P.K. (2015). On-farm characteristics and biosecurity protocols for small-scale swine producers in eastern Australia. Prev. Vet. Med., 118: 104-116.

  23. Sellers, R.F. (1971). Quantitative aspects of the spread of foot-and-mouth disease. Vet. Bull. Weybridge., 41: 431-439. 

  24. Sobrino, F., Davila, M., Ortin, J. and Domingo, E. (1983). Multiple genetic variants arise in the course of replication of foot-and-    mouth disease virus in cell culture. Virol., 128: 310-318.

  25. Subramaniam, S., Mohapatra, J.K., Das, B., Sanyal, A. and Pattnaik, B. (2015). Genetic and antigenic analysis of foot-and-mouth disease virus serotype O responsible for outbreaks in India during 2013. Infect. Genet. Evol., 30: 59-64. 

  26. Subramaniam, S., Pattnaik, B., Sanyal, A., Mohapatra, J.K., Pawar, S.S., Sharma, G.K., Das, B. and Dash, B.B. (2013). Status of foot-    and-mouth disease in India. Transbound. Emerg. Dis., 60: 197-203.

  27. Tamura, K., Stecher, G., Peterson, D., Filipski, A. and Kumar, S. (2013). MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Mol. Biol. Evol., 30: 2725-2729.

  28. Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994). CLUSTAL W improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weightmatrix choice. Nucleic Acids Res., 22: 4673-4680. 

Editorial Board

View all (0)