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Current IssueEditorial BoardOnline First ArticlesArchive

volume 49 issue 2 (april 2015) : 173-179,   Doi: 10.5958/0976-0555.2015.00057.6

Genetic characterization of the Akkaraman, Morkaraman and Karayaka sheep through microsatellite variation

H
Huseyin Das*
I
Ibrahim Turan
S
Selim Demir
1Vocational High School, Department of Veterinary, Gumushane University, TR-29100 Gumushane-Turkey.
Cite article:- Das* Huseyin, Turan Ibrahim, Demir Selim (2025). Genetic characterization of the Akkaraman, Morkaraman and Karayaka sheep through microsatellite variation. Indian Journal of Animal Research. 49(2): 173-179. doi: 10.5958/0976-0555.2015.00057.6.

ABSTRACT

Genotypes have to be controlled periodically and necessary precautions should be taken in order to ensure that animal biodiversity is not lost. In this study, the genotypes of the Akkaraman, Karayaka and Morkaraman species from among Turkey’s local sheep were examined at 7 different microsatellite loci. The average allele counts are close to each other and were determined as 8,905±0,483. Whereas the PIC values ranged from between 0,507-0,794 at an average of 0,705. The He and Ho values used to calculate genetic diversity were determined on average as 0,734±0,023 and 0,509±0,038 respectively. According to the Fisher-Exact test result, the populations are not in HWE (P

REFERENCES

  1. Acar, H. (2010). Bioinformatic analyses in microsatellite-based genetic diversity of Turkish sheep breeds, Master Thesis, Middle East Technical University. Turkey.
  2. Acan, SC. (2012). Genetic diversity of sheep breeds focusing on conservation research in Turkey. Doctorate Thesis, Mýddle East Technical University, Turkey.
  3. Ceballos, G., García, A. and Ehrlich, PR. (2010). The sixth extinction crisis: Loss of animal populations and species. J Cosmol 8: 1821-1831.
  4. Demirci, S., Koban, E., Dogan, SA., Yüncü, E. and Togan, I. (2010). A study on Mitochondrial DNA haplogroups and control region sequences of Turkish native sheep breeds. The 5th International Symposium on Health Informatics and Bioinformatics, Lara, Antalya, Turkey.
  5. Ertugrul, M., Dellal, G., Soysal, Ý., Elmaci, C., Akin, O., Arat, S., Barutcu, I., Pehlivan, E. and Yilmaz, O. (2009). Türkiye Yerli Koyun Irklarinin Korunmasý. Uludag Üniversitesi Ziraat Fakültesi Dergisi, 23 (2): 97-119.
  6. Goudet, J. (1995). FSTAT (version 2.9.3): a computer programme to calculate F-statistics. J Hered, 8: 485–486.
  7. Hoda, A. and Marsan, PA. (2012). Genetic Characterization of Albanian Sheep Breeds by Microsatellite Markers, In: Caliskan M (eds.) Analysis of Genetic Variation in Animals. InTech Publishing, Rijeka, Croatia. 372 p.
  8. Koban, E. (2004). Genetic diversity of native and crossbreed sheep breeds in Anatolia. Doctorate Thesis, Middle East Technical University, Turkey.
  9. Ligda, CH. Altarayrah, J. and Georgoudis, A. (2009). Genetic analysis of Greek sheep breeds using microsatellite markers for setting conservation priorities. Small Rumin Res, 83: 42-48.
  10. Meszaros, SA., Banks, RG. and Van der Werf JHJ. (1998). Optimizing breeding structure in sheep flocks when inbreeding depresses genetic gain through effects on reproduction. Proceedings of the 6th World Congress on Genetics Applied to Livestock Production, Armidale, Australia.
  11. Nei, M. (1973). Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70: 3321-3323.
  12. Ozdemir, M., Bilgin, OC. and Esenbuga, N. (2011). Determination of genetic distance between Turkish sheep breeds with various methods using some blood protein loci. J Anim Plant Sci, 21: 459-464.
  13. Peakall, R. and Smouse PE. (2006). GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes, 6: 288-295.
  14. Raymond, M. and Rousset, F. (1995). Genepop (version 1.2), A population genetics software for exact tests and ecumenicism. J Hered 8, 6: 248-249.
  15. Rijks, JM., Hoffman, JI., Kuiken, T., Osterhaus, AD. and Amos, W. (2008). Heterozygosity and lungworm burden in harbour seals (Phoca vitulina). Heredity, 100: 587–593.
  16. Soysal, MI., Özkan, E. and Gürcan, EK. (2003). The status of native farm animal genetic diversity in Turkiye and in the World. Trakia J Sci, 1: 1-13
  17. Soysal, MI., Koban, E., Özkan, E., Altunok, V., Bulut, Z., Nizamiloglu, M. and Togan I. (2005). Evolutionary relationship among three native and two crossbreed sheep breeds of Turkey: preliminary results. Revue Med Vet, 156 (5): 289-293.
  18. Stephen, J., Wollny, CB. and Gwakisa, PS. (2003). Genetic Relationships among five Ecotypes of Sheep in the United Republic of Tanzania. Communýty-Based Management Of Animal Genetic Resources (FAO), Mbabane, Swaziland.
  19. Togan, I., Demirci, S., Acan, SC., Koban Baþtanlar, E., Acar, H., Yüncü, E., Ayanoglu, IC. and Parmaksýz, A. (2011). Genetic diversity of Turkish native sheep in conservation studies. RBI 8th Global Conference on the Conservation of Animal Genetic Resources, Tekirdað, Turkey.
  20. Uzun, M., Gutiérrez-Gil, B., Arranz, JJ., San Primitivo, F., Saatci, M., Kaya, M. and Bayón, Y. (2006). Genetic relationships among Turkish sheep. Genet Sel Evol, 38: 513-524.
  21. Wright, S. (1978). Variability Within And Among Natural Populations. University of Chicago Press, Chicago, USA.
  22. Yilmaz, O., Wilson, RT., Kor, A., Cengiz, F. and Ertugrul, M. (2012). The farm animal genetic resources of Turkey: sheep common and rare breeds. Bitlis Eren University Journal of Science & Technology. 2: 1-5.
  23. Yüce, H. and Bilgin, G. (2004). Association between blood proteins polymorphism and some milk yield traits in Bornova cross-bred goats. Hayvansal Üretim, 45: 28-32.
  24. Yuncu, E. (2009). Mitochondrial DNA (mtDNA) haplogroup composition in Turkish sheep breeds. Master Thesis, Middle East Technical University, Turkey.
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    volume 49 issue 2 (april 2015) : 173-179,   Doi: 10.5958/0976-0555.2015.00057.6

    Genetic characterization of the Akkaraman, Morkaraman and Karayaka sheep through microsatellite variation

    H
    Huseyin Das*
    I
    Ibrahim Turan
    S
    Selim Demir
    1Vocational High School, Department of Veterinary, Gumushane University, TR-29100 Gumushane-Turkey.
    Cite article:- Das* Huseyin, Turan Ibrahim, Demir Selim (2025). Genetic characterization of the Akkaraman, Morkaraman and Karayaka sheep through microsatellite variation. Indian Journal of Animal Research. 49(2): 173-179. doi: 10.5958/0976-0555.2015.00057.6.

    ABSTRACT

    Genotypes have to be controlled periodically and necessary precautions should be taken in order to ensure that animal biodiversity is not lost. In this study, the genotypes of the Akkaraman, Karayaka and Morkaraman species from among Turkey’s local sheep were examined at 7 different microsatellite loci. The average allele counts are close to each other and were determined as 8,905±0,483. Whereas the PIC values ranged from between 0,507-0,794 at an average of 0,705. The He and Ho values used to calculate genetic diversity were determined on average as 0,734±0,023 and 0,509±0,038 respectively. According to the Fisher-Exact test result, the populations are not in HWE (P

    REFERENCES

    1. Acar, H. (2010). Bioinformatic analyses in microsatellite-based genetic diversity of Turkish sheep breeds, Master Thesis, Middle East Technical University. Turkey.
    2. Acan, SC. (2012). Genetic diversity of sheep breeds focusing on conservation research in Turkey. Doctorate Thesis, Mýddle East Technical University, Turkey.
    3. Ceballos, G., García, A. and Ehrlich, PR. (2010). The sixth extinction crisis: Loss of animal populations and species. J Cosmol 8: 1821-1831.
    4. Demirci, S., Koban, E., Dogan, SA., Yüncü, E. and Togan, I. (2010). A study on Mitochondrial DNA haplogroups and control region sequences of Turkish native sheep breeds. The 5th International Symposium on Health Informatics and Bioinformatics, Lara, Antalya, Turkey.
    5. Ertugrul, M., Dellal, G., Soysal, Ý., Elmaci, C., Akin, O., Arat, S., Barutcu, I., Pehlivan, E. and Yilmaz, O. (2009). Türkiye Yerli Koyun Irklarinin Korunmasý. Uludag Üniversitesi Ziraat Fakültesi Dergisi, 23 (2): 97-119.
    6. Goudet, J. (1995). FSTAT (version 2.9.3): a computer programme to calculate F-statistics. J Hered, 8: 485–486.
    7. Hoda, A. and Marsan, PA. (2012). Genetic Characterization of Albanian Sheep Breeds by Microsatellite Markers, In: Caliskan M (eds.) Analysis of Genetic Variation in Animals. InTech Publishing, Rijeka, Croatia. 372 p.
    8. Koban, E. (2004). Genetic diversity of native and crossbreed sheep breeds in Anatolia. Doctorate Thesis, Middle East Technical University, Turkey.
    9. Ligda, CH. Altarayrah, J. and Georgoudis, A. (2009). Genetic analysis of Greek sheep breeds using microsatellite markers for setting conservation priorities. Small Rumin Res, 83: 42-48.
    10. Meszaros, SA., Banks, RG. and Van der Werf JHJ. (1998). Optimizing breeding structure in sheep flocks when inbreeding depresses genetic gain through effects on reproduction. Proceedings of the 6th World Congress on Genetics Applied to Livestock Production, Armidale, Australia.
    11. Nei, M. (1973). Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70: 3321-3323.
    12. Ozdemir, M., Bilgin, OC. and Esenbuga, N. (2011). Determination of genetic distance between Turkish sheep breeds with various methods using some blood protein loci. J Anim Plant Sci, 21: 459-464.
    13. Peakall, R. and Smouse PE. (2006). GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes, 6: 288-295.
    14. Raymond, M. and Rousset, F. (1995). Genepop (version 1.2), A population genetics software for exact tests and ecumenicism. J Hered 8, 6: 248-249.
    15. Rijks, JM., Hoffman, JI., Kuiken, T., Osterhaus, AD. and Amos, W. (2008). Heterozygosity and lungworm burden in harbour seals (Phoca vitulina). Heredity, 100: 587–593.
    16. Soysal, MI., Özkan, E. and Gürcan, EK. (2003). The status of native farm animal genetic diversity in Turkiye and in the World. Trakia J Sci, 1: 1-13
    17. Soysal, MI., Koban, E., Özkan, E., Altunok, V., Bulut, Z., Nizamiloglu, M. and Togan I. (2005). Evolutionary relationship among three native and two crossbreed sheep breeds of Turkey: preliminary results. Revue Med Vet, 156 (5): 289-293.
    18. Stephen, J., Wollny, CB. and Gwakisa, PS. (2003). Genetic Relationships among five Ecotypes of Sheep in the United Republic of Tanzania. Communýty-Based Management Of Animal Genetic Resources (FAO), Mbabane, Swaziland.
    19. Togan, I., Demirci, S., Acan, SC., Koban Baþtanlar, E., Acar, H., Yüncü, E., Ayanoglu, IC. and Parmaksýz, A. (2011). Genetic diversity of Turkish native sheep in conservation studies. RBI 8th Global Conference on the Conservation of Animal Genetic Resources, Tekirdað, Turkey.
    20. Uzun, M., Gutiérrez-Gil, B., Arranz, JJ., San Primitivo, F., Saatci, M., Kaya, M. and Bayón, Y. (2006). Genetic relationships among Turkish sheep. Genet Sel Evol, 38: 513-524.
    21. Wright, S. (1978). Variability Within And Among Natural Populations. University of Chicago Press, Chicago, USA.
    22. Yilmaz, O., Wilson, RT., Kor, A., Cengiz, F. and Ertugrul, M. (2012). The farm animal genetic resources of Turkey: sheep common and rare breeds. Bitlis Eren University Journal of Science & Technology. 2: 1-5.
    23. Yüce, H. and Bilgin, G. (2004). Association between blood proteins polymorphism and some milk yield traits in Bornova cross-bred goats. Hayvansal Üretim, 45: 28-32.
    24. Yuncu, E. (2009). Mitochondrial DNA (mtDNA) haplogroup composition in Turkish sheep breeds. Master Thesis, Middle East Technical University, Turkey.
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