We analyzed 204 samples recovered from diseased and healthy pigs in central China from 2014 to 2017 and isolated 185
E. coli strains on chromogenic media. 16S rRNA sequences were used to identify the bacterial species of the isolated strains.
Detection of biofilm formation ability of isolates
We used crystal violet staining to quantify the formation of biofilm in
E. coli isolates and grouped isolated based on the A595 values of the stained biofilm as non-adherent, weakly, moderately, or strongly adherent (Fig 1 A). Out of the 185 samples, 56 (30.27%) had strong biofilm-forming ability, 54 (29.19%) had moderate ability, 52 (28.11%) showed weak ability and 23 (12.43%) could not form biofilm (Fig 1 B). This paper analyzed the biofilm-formation ability of
E. coli from pigs in central China. Among the 185 strains of
E. coli isolates, 162 strains can form biofilms and according to the biofilm-forming ability. This indicates that the biofilm formation rate of
E. coli biofilms in central China is high. This may be caused by the long-term use of low-concentration antibiotics as growth promoters in pigs during the feed process (Chakraborty
et al., 2020; Pandey
et al., 2014). Under the pressure of low concentrations of antibiotics,
E. coli that form biofilms were screened out, resulting in a high rate of
E. coli biofilm formation.
Evaluation of Biofilm by Confocal Laser Scanning Microscopy (CLSM) in an Isolate
An
E. coli isolate classified as strongly biofilm-forming ability on 96-wells polystyrene plates was selected for CLSM analysis of biofilm. As shown in Fig 2, the green fluorescence (SYTO 9) indicates the presence of biofilm and the biofilm structure and bacterial survival produced by
E. coli isolated from a sample of diarrhea piglets. Observed by CLSM the isolates showed that the bacteria with strong biofilm-forming ability were dense clumps. In the biofilm state, the density of bacteria is high and the space between the bacteria is narrow and its three-dimensional structure can effectively protect the bacteria inside the biofilm. The extracellular matrix and the narrow space between the strains become a barrier preventing antibiotics from penetrating the biofilm.
Relationship between biofilm formation ability and phylogenetic groups of isolates
According to the biofilm formation ability, the
E. coli strains were further classified into the following phylogenetic groups (Fig 3), strong (56): group A (10.71%, 6/56), group B1 (5.36%, 3/56), group B2 (35.71%, 20/56) and group D (48.21%, 27/56); moderate: group A (14.81%, 6/54), group B1 (7.41%, 3/54), group B2 (33.33%, 20/54) and group D (44.44%, 27/54); weak: group A (23.08%, 12/52), group B1 (19.23%, 10/56), group B2 (30.77%, 16/56) and group D (26.92%, 14/56).
We found that the biofilm formation ability of 162 isolates was different from each other and biofilm-forming ability may correlate with phylogenetic group.
E. coli strains can be classified into four phylogenetic groups: “A” “B1” “B2” and “D”
(Nowrouzian et al., 2005). We found that 40.12% (65/162) of the isolates belonged to group D, 33.33% (54/162) to group B2, 16.05% (26/162) to group B1 and 10.49% (17/162) to group A. These groupings served as a helpful reference for the ecological distribution and genetic diversity of
E. coli in central China. Phylogenetic groups B2 and D are classified as pathogenic
E. coli (Deshpande et al., 2015). Pathogenic strains belonging to group B2 and, to a lesser extent, group D, more frequently carry virulence factor genes compared to group A and B1
(Nowrouzian et al., 2005). The B2 group includes important pathogens, such as extra intestinal pathogenic, adherent-invasive and uropathogenic strains
(Deshpande et al., 2015). In accordance to this, we found that
E. coli isolated from dead and/or sick pigs mainly belonged to groups B2 and D (data not shown). In addition, the results of the phylogenetic group analysis showed that group B2 and D accounted for 83.93% (47/56) of the strong biofilm-forming ability group. Therefore, we can speculate that the formation of strong biofilms may be related to their strong adhesion and persistence ability.
Comparison of antibiotic resistance rates between planktonic condition and biofilms condition in different biofilm-forming ability groups (strong, moderate, weak)
To test whether the strains of different biofilm-forming ability groups in the planktonic state and the biofilm state have different resistance to antibiotic drugs, we conducted drug sensitivity assays using 8 different antibiotic drugs. In the planktonic state (Supplementary material, Table S1), there was no significant difference in the resistance rate between the different biofilm-forming ability groups and all isolates showed a low resistance rate to norfloxacin (8.02%), cotrimoxazole (26.54%), ofloxacin (33.95%), ciprofloxacin (39.51%). The resistance rate against ampicillin was 58.02% and the resistance rate for other antibiotics was between 40% to 55%. In the biofilm state (Supplementary material, Table S2), the resistance rates of the strong biofilm-forming ability group and the weak biofilm-forming ability group were the highest and the lowest, respectively. And the isolates showed a high resistance rate to ampicillin (88.89%), gentamicin (83.33%), aztreonam (81.48%). The resistance rate against norfloxacin was 20.37% and the resistance rate for other antibiotics was between 45% to 80%. Obviously, the antibiotic resistance among biofilm producing
E. coli was significantly higher than those that did not produce biofilm (p<0.05) and the correlation between biofilm production and antibiotic resistance was statistically significant (p<0.05) for the antibiotics that were tested (Fig 4D).
Next, we investigated the change relationship of antibiotic resistance rates between planktonic condition and biofilms condition in different biofilm-forming ability groups (strong, moderate, weak) of
E. coli isolates (Fig 4). For the strong biofilm-forming ability group (Fig 4C), when the isolate formed a biofilm, the resistance rate is significantly higher than that of the planktonic state. Among them, the resistance rate of ofloxacin increased by 58.93% and other antibiotics was increased rate between 40% to 58% besides for norfloxacin it was 26.79%. For the moderate biofilm-forming ability group (Fig 4 B), the resistance rate of norfloxacin increased by 5.56% and for other antibiotics therate increased was between 10% to 35%. As shown in Fig 4A, the weak biofilm-forming ability group had the least increase in drug resistance rate, all below 10% except gentamicin (23.08%).
The
E. coli isolates from central China showed a high resistance rate to most antibiotics that were tested, with more than 92% of the strains showing MDR. We found that
E. coli isolates were sensitive to quinolone and sulfonamide, such as norfloxacin and cotrimoxazole. However, the isolates showed high resistance against beta-lactam antibiotics, including ampicillin and aztreonam. The strains exhibited moderate resistance against aminoglycoside antibiotics (gentamicin, kanamycin).
Tian et al., (2009) reported the increased prevalence of animals carrying
E. coli isolates with reduced susceptibility to third generation cephalosporins and monobactams from 2002 to 2007 in pig farms in China.
Gao et al., (2015) selected six pig farms located in different regions of Shandong Province, China and found that the extended-spectrum β-lactamases (ESBLs)-producing
E. coli from all six pig farms were susceptible to amoxicillin/clavulanic acid (AMC), piperacillin/tazobactam (TZP), ampicillin/salbactam (SAM) and trimethoprim (TMP), but resistant to ampicillin (AMP) and cephalothin (CF) and highly resistant to tetracycline (TE)
(Gao et al., 2015). E. coli strains collected from a large-scale swine farm in Xiamen of China were most frequently resistant to sulfonamide, trimethoprim, aminoglycoside, chloramphenicol, beta-lactam and tetracycline
(Liu et al., 2015).
In this paper, the antibiotics susceptibility tested proved all biofilm producing
E. coli had higher antibiotic resistance than non-biofilm producing
E. coli. In addition, we found that
E. coli producing strongly biofilm were significantly more resistant to antibiotics than moderately and weakly biofilm producing
E. coli (p < 0.05). And the association between the ability of biofilm formation and antibiotic resistance was statistically significant (p < 0.05). Similarly,
Pavlickova et al., found that 46 out of 66 antibiotic resistant isolates were able to form biofilm, showing a significant correlation between prevalence of antibiotic resistance and biofilm formation ability
(Pavlickova et al., 2017).
It is well known that bacteria growing in a biofilm are intrinsically resistant to many antibiotics
(Li et al., 2020). The improvement of bacterial resistance can cause the disease to prolong and the formation of biofilm is one of the important reasons for the improvement of drug resistance (Wang
et al., 2019). Biofilm increases antibiotic resistance up to 1000 folds and high antimicrobial concentrations are required to inactivate organisms growing in a biofilm (Ciofu
et al., 2017). This may be due to the failure of antibiotics to penetrate biofilms and the slow growth rate, altered metabolism, persister cells, oxygen gradients and extracellular biofilm matrix
(Venkatesan et al., 2015). Obviously, reducing the ability to form biofilms will be an important means to combat multi-drug resistant
E. coli.